Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
NPHP4O75161 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC26.2■■□□□ 1.79
NPHP4O75161 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC26.2■■□□□ 1.79
NPHP4O75161 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.79
NPHP4O75161 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
NPHP4O75161 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
NPHP4O75161 HTR5BP-201ENST00000430851 1154 ntBASIC26.2■■□□□ 1.78
NPHP4O75161 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC26.2■■□□□ 1.78
NPHP4O75161 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC26.2■■□□□ 1.78
NPHP4O75161 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC26.2■■□□□ 1.78
NPHP4O75161 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC26.2■■□□□ 1.78
NPHP4O75161 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC26.2■■□□□ 1.78
NPHP4O75161 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC26.19■■□□□ 1.78
NPHP4O75161 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
NPHP4O75161 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC26.19■■□□□ 1.78
NPHP4O75161 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC26.19■■□□□ 1.78
NPHP4O75161 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
NPHP4O75161 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC26.19■■□□□ 1.78
NPHP4O75161 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.78
NPHP4O75161 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC26.19■■□□□ 1.78
NPHP4O75161 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
NPHP4O75161 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC26.19■■□□□ 1.78
NPHP4O75161 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
NPHP4O75161 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC26.19■■□□□ 1.78
NPHP4O75161 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC26.19■■□□□ 1.78
NPHP4O75161 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC26.19■■□□□ 1.78
NPHP4O75161 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC26.19■■□□□ 1.78
NPHP4O75161 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
NPHP4O75161 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC26.19■■□□□ 1.78
NPHP4O75161 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
NPHP4O75161 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC26.18■■□□□ 1.78
NPHP4O75161 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
NPHP4O75161 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
NPHP4O75161 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
NPHP4O75161 CALY-203ENST00000368558 825 ntTSL 5 BASIC26.18■■□□□ 1.78
NPHP4O75161 CENPM-204ENST00000402420 688 ntTSL 5 BASIC26.18■■□□□ 1.78
NPHP4O75161 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
NPHP4O75161 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
NPHP4O75161 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
NPHP4O75161 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC26.18■■□□□ 1.78
NPHP4O75161 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
NPHP4O75161 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
NPHP4O75161 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC26.18■■□□□ 1.78
NPHP4O75161 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
NPHP4O75161 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC26.18■■□□□ 1.78
NPHP4O75161 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC26.18■■□□□ 1.78
NPHP4O75161 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
NPHP4O75161 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC26.17■■□□□ 1.78
NPHP4O75161 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC26.17■■□□□ 1.78
NPHP4O75161 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC26.17■■□□□ 1.78
NPHP4O75161 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
NPHP4O75161 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
NPHP4O75161 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
NPHP4O75161 AC023274.1-201ENST00000418278 595 ntBASIC26.17■■□□□ 1.78
NPHP4O75161 CRCP-205ENST00000431089 942 ntTSL 2 BASIC26.17■■□□□ 1.78
NPHP4O75161 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC26.17■■□□□ 1.78
NPHP4O75161 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC26.17■■□□□ 1.78
NPHP4O75161 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC26.17■■□□□ 1.78
NPHP4O75161 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC26.17■■□□□ 1.78
NPHP4O75161 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
NPHP4O75161 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC26.17■■□□□ 1.78
NPHP4O75161 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
NPHP4O75161 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC26.16■■□□□ 1.78
NPHP4O75161 AC073314.1-201ENST00000568729 2216 ntBASIC26.16■■□□□ 1.78
NPHP4O75161 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC26.16■■□□□ 1.78
NPHP4O75161 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
NPHP4O75161 AL035633.1-201ENST00000406139 838 ntBASIC26.16■■□□□ 1.78
NPHP4O75161 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC26.16■■□□□ 1.78
NPHP4O75161 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC26.16■■□□□ 1.78
NPHP4O75161 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC26.16■■□□□ 1.78
NPHP4O75161 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC26.16■■□□□ 1.78
NPHP4O75161 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC26.16■■□□□ 1.78
NPHP4O75161 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC26.16■■□□□ 1.78
NPHP4O75161 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
NPHP4O75161 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC26.16■■□□□ 1.78
NPHP4O75161 AL596442.2-201ENST00000610240 980 ntBASIC26.16■■□□□ 1.78
NPHP4O75161 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
NPHP4O75161 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
NPHP4O75161 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
NPHP4O75161 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC26.16■■□□□ 1.78
NPHP4O75161 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
NPHP4O75161 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC26.16■■□□□ 1.78
NPHP4O75161 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC26.16■■□□□ 1.78
NPHP4O75161 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
NPHP4O75161 AP002414.3-201ENST00000589352 1468 ntBASIC26.16■■□□□ 1.78
NPHP4O75161 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
NPHP4O75161 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
NPHP4O75161 KIRREL3-AS3-201ENST00000404882 831 ntBASIC26.15■■□□□ 1.78
NPHP4O75161 ABCD1P5-201ENST00000445663 754 ntBASIC26.15■■□□□ 1.78
NPHP4O75161 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC26.15■■□□□ 1.78
NPHP4O75161 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC26.15■■□□□ 1.78
NPHP4O75161 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC26.15■■□□□ 1.78
NPHP4O75161 AC009533.2-201ENST00000543664 586 ntBASIC26.15■■□□□ 1.78
NPHP4O75161 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC26.15■■□□□ 1.78
NPHP4O75161 AC011467.2-201ENST00000598425 242 ntBASIC26.15■■□□□ 1.78
NPHP4O75161 MTDHP5-201ENST00000598980 586 ntBASIC26.15■■□□□ 1.78
NPHP4O75161 AL138831.2-201ENST00000606564 490 ntBASIC26.15■■□□□ 1.78
NPHP4O75161 TEX21P-204ENST00000641479 1693 ntBASIC26.15■■□□□ 1.78
NPHP4O75161 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
NPHP4O75161 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms