Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
COL6A5A8TX70 RN7SL204P-201ENST00000582831 262 ntBASIC14.43□□□□□ -0.1
COL6A5A8TX70 AL139288.1-201ENST00000623748 933 ntBASIC14.43□□□□□ -0.1
COL6A5A8TX70 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC14.43□□□□□ -0.1
COL6A5A8TX70 HEIH-201ENST00000623091 1652 ntBASIC14.43□□□□□ -0.1
COL6A5A8TX70 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL6A5A8TX70 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC14.43□□□□□ -0.1
COL6A5A8TX70 AC007225.1-201ENST00000566331 1836 ntBASIC14.43□□□□□ -0.1
COL6A5A8TX70 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL6A5A8TX70 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL6A5A8TX70 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
COL6A5A8TX70 AL109659.2-201ENST00000606809 1674 ntBASIC14.43□□□□□ -0.1
COL6A5A8TX70 AP002414.3-201ENST00000589352 1468 ntBASIC14.43□□□□□ -0.1
COL6A5A8TX70 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC14.43□□□□□ -0.1
COL6A5A8TX70 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL6A5A8TX70 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL6A5A8TX70 AC108751.1-201ENST00000490852 363 ntBASIC14.43□□□□□ -0.1
COL6A5A8TX70 NOP2-220ENST00000545915 630 ntTSL 2 BASIC14.43□□□□□ -0.1
COL6A5A8TX70 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC14.43□□□□□ -0.1
COL6A5A8TX70 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL6A5A8TX70 AL691432.2-201ENST00000607222 2038 ntBASIC14.43□□□□□ -0.1
COL6A5A8TX70 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL6A5A8TX70 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A5A8TX70 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A5A8TX70 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC14.42□□□□□ -0.1
COL6A5A8TX70 GOLGA6L17P-202ENST00000614358 1398 ntBASIC14.42□□□□□ -0.1
COL6A5A8TX70 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A5A8TX70 EDF1-203ENST00000371649 790 ntTSL 2 BASIC14.42□□□□□ -0.1
COL6A5A8TX70 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A5A8TX70 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC14.42□□□□□ -0.1
COL6A5A8TX70 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC14.42□□□□□ -0.1
COL6A5A8TX70 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A5A8TX70 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC14.42□□□□□ -0.1
COL6A5A8TX70 CCND1-203ENST00000536559 553 ntTSL 3 BASIC14.42□□□□□ -0.1
COL6A5A8TX70 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
COL6A5A8TX70 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC14.42□□□□□ -0.1
COL6A5A8TX70 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC14.42□□□□□ -0.1
COL6A5A8TX70 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC14.42□□□□□ -0.1
COL6A5A8TX70 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
COL6A5A8TX70 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC14.42□□□□□ -0.1
COL6A5A8TX70 AC107918.4-202ENST00000641623 219 ntBASIC14.42□□□□□ -0.1
COL6A5A8TX70 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
COL6A5A8TX70 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
COL6A5A8TX70 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A5A8TX70 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A5A8TX70 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A5A8TX70 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.42□□□□□ -0.1
COL6A5A8TX70 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC14.42□□□□□ -0.1
COL6A5A8TX70 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC14.42□□□□□ -0.1
COL6A5A8TX70 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL6A5A8TX70 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.42□□□□□ -0.1
COL6A5A8TX70 MIR3180-4-201ENST00000582223 153 ntBASIC14.42□□□□□ -0.1
COL6A5A8TX70 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC14.42□□□□□ -0.1
COL6A5A8TX70 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
COL6A5A8TX70 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A5A8TX70 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
COL6A5A8TX70 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A5A8TX70 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A5A8TX70 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A5A8TX70 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A5A8TX70 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
COL6A5A8TX70 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC14.41□□□□□ -0.1
COL6A5A8TX70 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC14.41□□□□□ -0.1
COL6A5A8TX70 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A5A8TX70 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
COL6A5A8TX70 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
COL6A5A8TX70 DANCR-204ENST00000444958 709 ntTSL 3 BASIC14.41□□□□□ -0.1
COL6A5A8TX70 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC14.41□□□□□ -0.1
COL6A5A8TX70 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
COL6A5A8TX70 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A5A8TX70 AC006128.1-201ENST00000624704 1661 ntBASIC14.41□□□□□ -0.1
COL6A5A8TX70 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A5A8TX70 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC14.41□□□□□ -0.1
COL6A5A8TX70 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A5A8TX70 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A5A8TX70 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL6A5A8TX70 AC002472.2-201ENST00000442739 958 ntBASIC14.41□□□□□ -0.1
COL6A5A8TX70 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC14.41□□□□□ -0.1
COL6A5A8TX70 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC14.41□□□□□ -0.1
COL6A5A8TX70 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC14.41□□□□□ -0.1
COL6A5A8TX70 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC14.41□□□□□ -0.1
COL6A5A8TX70 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC14.41□□□□□ -0.1
COL6A5A8TX70 ANKRD20A8P-203ENST00000641373 517 ntBASIC14.41□□□□□ -0.1
COL6A5A8TX70 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A5A8TX70 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A5A8TX70 FBXW4P1-201ENST00000426721 2239 ntBASIC14.4□□□□□ -0.1
COL6A5A8TX70 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
COL6A5A8TX70 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
COL6A5A8TX70 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC14.4□□□□□ -0.1
COL6A5A8TX70 AP002414.1-201ENST00000391405 1147 ntBASIC14.4□□□□□ -0.1
COL6A5A8TX70 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC14.4□□□□□ -0.1
COL6A5A8TX70 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.4□□□□□ -0.1
COL6A5A8TX70 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC14.4□□□□□ -0.1
COL6A5A8TX70 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL6A5A8TX70 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.4□□□□□ -0.1
COL6A5A8TX70 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC14.4□□□□□ -0.1
COL6A5A8TX70 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC14.4□□□□□ -0.1
COL6A5A8TX70 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC14.4□□□□□ -0.1
COL6A5A8TX70 GOLGA6L5P-202ENST00000515341 1828 ntBASIC14.4□□□□□ -0.1
COL6A5A8TX70 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms