Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.25■□□□□ 0.35
CPSF4LA6NMK7 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CPSF4LA6NMK7 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CPSF4LA6NMK7 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CPSF4LA6NMK7 AC079598.2-202ENST00000546624 1451 ntBASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 TK2-204ENST00000525974 1178 ntTSL 2 BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 CD99P1-205ENST00000527459 561 ntBASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 AC068587.9-201ENST00000641814 219 ntBASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.24■□□□□ 0.35
CPSF4LA6NMK7 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CPSF4LA6NMK7 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CPSF4LA6NMK7 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CPSF4LA6NMK7 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CPSF4LA6NMK7 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CPSF4LA6NMK7 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CPSF4LA6NMK7 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.23■□□□□ 0.35
CPSF4LA6NMK7 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CPSF4LA6NMK7 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CPSF4LA6NMK7 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CPSF4LA6NMK7 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.23■□□□□ 0.35
CPSF4LA6NMK7 AC004951.3-201ENST00000418645 1148 ntBASIC17.23■□□□□ 0.35
CPSF4LA6NMK7 PPP1R14BP5-201ENST00000440334 435 ntBASIC17.23■□□□□ 0.35
CPSF4LA6NMK7 KSR1P1-201ENST00000446298 240 ntBASIC17.23■□□□□ 0.35
CPSF4LA6NMK7 FDX2-207ENST00000494368 584 ntTSL 4 BASIC17.23■□□□□ 0.35
CPSF4LA6NMK7 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CPSF4LA6NMK7 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.23■□□□□ 0.35
CPSF4LA6NMK7 AL353708.3-201ENST00000610272 989 ntBASIC17.23■□□□□ 0.35
CPSF4LA6NMK7 CR392000.1-201ENST00000624770 1228 ntBASIC17.23■□□□□ 0.35
CPSF4LA6NMK7 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CPSF4LA6NMK7 AC073592.3-201ENST00000625118 1834 ntBASIC17.23■□□□□ 0.35
CPSF4LA6NMK7 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.23■□□□□ 0.35
CPSF4LA6NMK7 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.23■□□□□ 0.35
CPSF4LA6NMK7 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CPSF4LA6NMK7 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CPSF4LA6NMK7 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 KRT16P1-201ENST00000399124 1418 ntBASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CPSF4LA6NMK7 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CPSF4LA6NMK7 KRT8P3-201ENST00000519669 1449 ntBASIC17.21■□□□□ 0.35
CPSF4LA6NMK7 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.21■□□□□ 0.35
CPSF4LA6NMK7 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.21■□□□□ 0.35
CPSF4LA6NMK7 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.21■□□□□ 0.35
CPSF4LA6NMK7 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.21■□□□□ 0.35
CPSF4LA6NMK7 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CPSF4LA6NMK7 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CPSF4LA6NMK7 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CPSF4LA6NMK7 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
CPSF4LA6NMK7 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms