Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC21.47■■□□□ 1.03
DDX41Q9UJV9 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
DDX41Q9UJV9 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 HOMER2P1-201ENST00000455653 964 ntBASIC21.46■■□□□ 1.03
DDX41Q9UJV9 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 ETFA-216ENST00000560726 942 ntTSL 3 BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 PCDHB18P-201ENST00000524813 2368 ntBASIC21.46■■□□□ 1.03
DDX41Q9UJV9 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
DDX41Q9UJV9 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
DDX41Q9UJV9 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC21.45■■□□□ 1.03
DDX41Q9UJV9 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
DDX41Q9UJV9 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.03
DDX41Q9UJV9 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
DDX41Q9UJV9 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
DDX41Q9UJV9 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
DDX41Q9UJV9 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC21.45■■□□□ 1.02
DDX41Q9UJV9 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
DDX41Q9UJV9 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
DDX41Q9UJV9 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
DDX41Q9UJV9 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
DDX41Q9UJV9 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC21.45■■□□□ 1.02
DDX41Q9UJV9 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC21.45■■□□□ 1.02
DDX41Q9UJV9 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
DDX41Q9UJV9 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC21.45■■□□□ 1.02
DDX41Q9UJV9 AC008622.2-201ENST00000617006 1229 ntBASIC21.45■■□□□ 1.02
DDX41Q9UJV9 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
DDX41Q9UJV9 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC21.45■■□□□ 1.02
DDX41Q9UJV9 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
DDX41Q9UJV9 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
DDX41Q9UJV9 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
DDX41Q9UJV9 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
DDX41Q9UJV9 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
DDX41Q9UJV9 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
DDX41Q9UJV9 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC21.44■■□□□ 1.02
DDX41Q9UJV9 AP000997.3-201ENST00000623333 2250 ntBASIC21.44■■□□□ 1.02
DDX41Q9UJV9 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC21.44■■□□□ 1.02
DDX41Q9UJV9 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
DDX41Q9UJV9 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
DDX41Q9UJV9 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
DDX41Q9UJV9 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
DDX41Q9UJV9 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
DDX41Q9UJV9 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
DDX41Q9UJV9 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
DDX41Q9UJV9 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
DDX41Q9UJV9 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC21.44■■□□□ 1.02
DDX41Q9UJV9 AC009947.2-201ENST00000444014 672 ntBASIC21.44■■□□□ 1.02
DDX41Q9UJV9 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
DDX41Q9UJV9 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC21.44■■□□□ 1.02
DDX41Q9UJV9 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC21.44■■□□□ 1.02
DDX41Q9UJV9 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC21.44■■□□□ 1.02
DDX41Q9UJV9 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC21.44■■□□□ 1.02
DDX41Q9UJV9 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
DDX41Q9UJV9 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
DDX41Q9UJV9 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
DDX41Q9UJV9 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC21.44■■□□□ 1.02
DDX41Q9UJV9 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC21.43■■□□□ 1.02
DDX41Q9UJV9 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
DDX41Q9UJV9 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
DDX41Q9UJV9 NOC2LP1-202ENST00000452600 2235 ntBASIC21.43■■□□□ 1.02
DDX41Q9UJV9 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC21.43■■□□□ 1.02
DDX41Q9UJV9 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC21.43■■□□□ 1.02
DDX41Q9UJV9 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC21.43■■□□□ 1.02
DDX41Q9UJV9 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
DDX41Q9UJV9 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
DDX41Q9UJV9 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
DDX41Q9UJV9 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC21.43■■□□□ 1.02
DDX41Q9UJV9 NEK4P2-201ENST00000580004 1012 ntBASIC21.43■■□□□ 1.02
DDX41Q9UJV9 AC091076.1-201ENST00000610741 619 ntBASIC21.43■■□□□ 1.02
DDX41Q9UJV9 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
DDX41Q9UJV9 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
DDX41Q9UJV9 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
DDX41Q9UJV9 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC21.43■■□□□ 1.02
DDX41Q9UJV9 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
DDX41Q9UJV9 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
DDX41Q9UJV9 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
DDX41Q9UJV9 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
DDX41Q9UJV9 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms