Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLCF1Q9UBD9 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLCF1Q9UBD9 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLCF1Q9UBD9 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC16.61■□□□□ 0.25
CLCF1Q9UBD9 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLCF1Q9UBD9 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC16.61■□□□□ 0.25
CLCF1Q9UBD9 PTK2-216ENST00000519881 863 ntTSL 3 BASIC16.61■□□□□ 0.25
CLCF1Q9UBD9 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.61■□□□□ 0.25
CLCF1Q9UBD9 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.61■□□□□ 0.25
CLCF1Q9UBD9 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.61■□□□□ 0.25
CLCF1Q9UBD9 AC104390.1-201ENST00000555663 520 ntBASIC16.61■□□□□ 0.25
CLCF1Q9UBD9 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC16.61■□□□□ 0.25
CLCF1Q9UBD9 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.61■□□□□ 0.25
CLCF1Q9UBD9 CLN6-214ENST00000636314 442 ntTSL 3 BASIC16.61■□□□□ 0.25
CLCF1Q9UBD9 HEIH-201ENST00000623091 1652 ntBASIC16.61■□□□□ 0.25
CLCF1Q9UBD9 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLCF1Q9UBD9 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CLCF1Q9UBD9 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLCF1Q9UBD9 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CLCF1Q9UBD9 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLCF1Q9UBD9 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLCF1Q9UBD9 AL161938.1-201ENST00000569833 2180 ntBASIC16.61■□□□□ 0.25
CLCF1Q9UBD9 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CLCF1Q9UBD9 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 AL157888.1-201ENST00000631930 593 ntBASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
CLCF1Q9UBD9 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC16.59■□□□□ 0.25
CLCF1Q9UBD9 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLCF1Q9UBD9 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
CLCF1Q9UBD9 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CLCF1Q9UBD9 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CLCF1Q9UBD9 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CLCF1Q9UBD9 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC16.59■□□□□ 0.25
CLCF1Q9UBD9 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLCF1Q9UBD9 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CLCF1Q9UBD9 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLCF1Q9UBD9 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLCF1Q9UBD9 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
CLCF1Q9UBD9 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC16.59■□□□□ 0.25
CLCF1Q9UBD9 AC010240.3-201ENST00000607688 395 ntBASIC16.59■□□□□ 0.25
CLCF1Q9UBD9 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC16.59■□□□□ 0.25
CLCF1Q9UBD9 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLCF1Q9UBD9 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLCF1Q9UBD9 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLCF1Q9UBD9 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC16.59■□□□□ 0.25
CLCF1Q9UBD9 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CLCF1Q9UBD9 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CLCF1Q9UBD9 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.25
CLCF1Q9UBD9 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
CLCF1Q9UBD9 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CLCF1Q9UBD9 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CLCF1Q9UBD9 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.58■□□□□ 0.24
CLCF1Q9UBD9 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC16.58■□□□□ 0.24
CLCF1Q9UBD9 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.58■□□□□ 0.24
CLCF1Q9UBD9 AC079602.3-201ENST00000623931 403 ntBASIC16.58■□□□□ 0.24
CLCF1Q9UBD9 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.58■□□□□ 0.24
CLCF1Q9UBD9 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC16.58■□□□□ 0.24
CLCF1Q9UBD9 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC16.58■□□□□ 0.24
CLCF1Q9UBD9 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CLCF1Q9UBD9 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
CLCF1Q9UBD9 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
CLCF1Q9UBD9 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CLCF1Q9UBD9 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC16.58■□□□□ 0.24
CLCF1Q9UBD9 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC16.58■□□□□ 0.24
CLCF1Q9UBD9 AC006333.2-201ENST00000607957 2099 ntBASIC16.58■□□□□ 0.24
CLCF1Q9UBD9 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CLCF1Q9UBD9 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
CLCF1Q9UBD9 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLCF1Q9UBD9 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms