Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 AC135050.7-201ENST00000624508 2218 ntBASIC20.9■□□□□ 0.94
CCSER1Q9C0I3 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC20.9■□□□□ 0.94
CCSER1Q9C0I3 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
CCSER1Q9C0I3 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.9■□□□□ 0.94
CCSER1Q9C0I3 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCSER1Q9C0I3 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCSER1Q9C0I3 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCSER1Q9C0I3 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCSER1Q9C0I3 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20.9■□□□□ 0.94
CCSER1Q9C0I3 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCSER1Q9C0I3 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CCSER1Q9C0I3 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC20.89■□□□□ 0.94
CCSER1Q9C0I3 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
CCSER1Q9C0I3 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CCSER1Q9C0I3 KRT8P50-201ENST00000562022 1438 ntBASIC20.89■□□□□ 0.94
CCSER1Q9C0I3 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.89■□□□□ 0.93
CCSER1Q9C0I3 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCSER1Q9C0I3 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.89■□□□□ 0.93
CCSER1Q9C0I3 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCSER1Q9C0I3 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC20.89■□□□□ 0.93
CCSER1Q9C0I3 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCSER1Q9C0I3 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCSER1Q9C0I3 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
CCSER1Q9C0I3 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCSER1Q9C0I3 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCSER1Q9C0I3 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCSER1Q9C0I3 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCSER1Q9C0I3 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
CCSER1Q9C0I3 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCSER1Q9C0I3 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCSER1Q9C0I3 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
CCSER1Q9C0I3 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCSER1Q9C0I3 HOXB1-202ENST00000577092 1414 ntBASIC20.88■□□□□ 0.93
CCSER1Q9C0I3 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
CCSER1Q9C0I3 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.88■□□□□ 0.93
CCSER1Q9C0I3 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCSER1Q9C0I3 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.88■□□□□ 0.93
CCSER1Q9C0I3 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCSER1Q9C0I3 ILF2-202ENST00000368681 726 ntTSL 2 BASIC20.88■□□□□ 0.93
CCSER1Q9C0I3 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC20.88■□□□□ 0.93
CCSER1Q9C0I3 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCSER1Q9C0I3 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.88■□□□□ 0.93
CCSER1Q9C0I3 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCSER1Q9C0I3 NAPSB-206ENST00000562112 1266 ntBASIC20.88■□□□□ 0.93
CCSER1Q9C0I3 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
CCSER1Q9C0I3 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.88■□□□□ 0.93
CCSER1Q9C0I3 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.88■□□□□ 0.93
CCSER1Q9C0I3 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC20.88■□□□□ 0.93
CCSER1Q9C0I3 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCSER1Q9C0I3 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.88■□□□□ 0.93
CCSER1Q9C0I3 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCSER1Q9C0I3 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCSER1Q9C0I3 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.87■□□□□ 0.93
CCSER1Q9C0I3 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCSER1Q9C0I3 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCSER1Q9C0I3 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCSER1Q9C0I3 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCSER1Q9C0I3 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCSER1Q9C0I3 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
CCSER1Q9C0I3 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCSER1Q9C0I3 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC20.87■□□□□ 0.93
CCSER1Q9C0I3 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCSER1Q9C0I3 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.87■□□□□ 0.93
CCSER1Q9C0I3 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCSER1Q9C0I3 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC20.87■□□□□ 0.93
CCSER1Q9C0I3 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.87■□□□□ 0.93
CCSER1Q9C0I3 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCSER1Q9C0I3 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCSER1Q9C0I3 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC20.87■□□□□ 0.93
CCSER1Q9C0I3 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCSER1Q9C0I3 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
CCSER1Q9C0I3 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
CCSER1Q9C0I3 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
CCSER1Q9C0I3 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCSER1Q9C0I3 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCSER1Q9C0I3 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCSER1Q9C0I3 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
CCSER1Q9C0I3 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCSER1Q9C0I3 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCSER1Q9C0I3 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC20.86■□□□□ 0.93
CCSER1Q9C0I3 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCSER1Q9C0I3 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCSER1Q9C0I3 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCSER1Q9C0I3 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCSER1Q9C0I3 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CCSER1Q9C0I3 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCSER1Q9C0I3 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.86■□□□□ 0.93
CCSER1Q9C0I3 AC128688.1-201ENST00000487626 519 ntBASIC20.86■□□□□ 0.93
CCSER1Q9C0I3 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.86■□□□□ 0.93
CCSER1Q9C0I3 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.86■□□□□ 0.93
CCSER1Q9C0I3 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC20.86■□□□□ 0.93
CCSER1Q9C0I3 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
CCSER1Q9C0I3 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC20.86■□□□□ 0.93
CCSER1Q9C0I3 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCSER1Q9C0I3 AC073912.3-201ENST00000624414 853 ntBASIC20.86■□□□□ 0.93
CCSER1Q9C0I3 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC20.86■□□□□ 0.93
CCSER1Q9C0I3 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCSER1Q9C0I3 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCSER1Q9C0I3 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCSER1Q9C0I3 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms