Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TRAIPQ9BWF2 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRAIPQ9BWF2 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
TRAIPQ9BWF2 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRAIPQ9BWF2 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRAIPQ9BWF2 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRAIPQ9BWF2 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.44■□□□□ 0.86
TRAIPQ9BWF2 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC20.44■□□□□ 0.86
TRAIPQ9BWF2 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.44■□□□□ 0.86
TRAIPQ9BWF2 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
TRAIPQ9BWF2 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TRAIPQ9BWF2 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC20.44■□□□□ 0.86
TRAIPQ9BWF2 GRAMD4P1-201ENST00000435181 1110 ntBASIC20.44■□□□□ 0.86
TRAIPQ9BWF2 CNP-204ENST00000472031 1019 ntTSL 2 BASIC20.44■□□□□ 0.86
TRAIPQ9BWF2 SEC1P-202ENST00000473944 940 ntBASIC20.44■□□□□ 0.86
TRAIPQ9BWF2 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC20.44■□□□□ 0.86
TRAIPQ9BWF2 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC20.44■□□□□ 0.86
TRAIPQ9BWF2 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC20.44■□□□□ 0.86
TRAIPQ9BWF2 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC20.44■□□□□ 0.86
TRAIPQ9BWF2 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRAIPQ9BWF2 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRAIPQ9BWF2 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC20.44■□□□□ 0.86
TRAIPQ9BWF2 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRAIPQ9BWF2 KRT8P7-201ENST00000533003 1432 ntBASIC20.44■□□□□ 0.86
TRAIPQ9BWF2 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.43■□□□□ 0.86
TRAIPQ9BWF2 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAIPQ9BWF2 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TRAIPQ9BWF2 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAIPQ9BWF2 AL512353.2-201ENST00000448759 1962 ntBASIC20.43■□□□□ 0.86
TRAIPQ9BWF2 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAIPQ9BWF2 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAIPQ9BWF2 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TRAIPQ9BWF2 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.43■□□□□ 0.86
TRAIPQ9BWF2 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC20.43■□□□□ 0.86
TRAIPQ9BWF2 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC20.43■□□□□ 0.86
TRAIPQ9BWF2 METTL23-204ENST00000586752 904 ntTSL 2 BASIC20.43■□□□□ 0.86
TRAIPQ9BWF2 AC024243.1-201ENST00000609234 778 ntBASIC20.43■□□□□ 0.86
TRAIPQ9BWF2 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC20.43■□□□□ 0.86
TRAIPQ9BWF2 CLN6-214ENST00000636314 442 ntTSL 3 BASIC20.43■□□□□ 0.86
TRAIPQ9BWF2 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAIPQ9BWF2 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAIPQ9BWF2 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAIPQ9BWF2 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.43■□□□□ 0.86
TRAIPQ9BWF2 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
TRAIPQ9BWF2 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
TRAIPQ9BWF2 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
TRAIPQ9BWF2 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TRAIPQ9BWF2 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
TRAIPQ9BWF2 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC20.43■□□□□ 0.86
TRAIPQ9BWF2 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
TRAIPQ9BWF2 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAIPQ9BWF2 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
TRAIPQ9BWF2 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAIPQ9BWF2 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAIPQ9BWF2 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAIPQ9BWF2 FXN-203ENST00000396366 922 ntTSL 2 BASIC20.42■□□□□ 0.86
TRAIPQ9BWF2 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAIPQ9BWF2 AC069148.1-201ENST00000608741 768 ntBASIC20.42■□□□□ 0.86
TRAIPQ9BWF2 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAIPQ9BWF2 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAIPQ9BWF2 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAIPQ9BWF2 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
TRAIPQ9BWF2 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
TRAIPQ9BWF2 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TRAIPQ9BWF2 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.42■□□□□ 0.86
TRAIPQ9BWF2 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRAIPQ9BWF2 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAIPQ9BWF2 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.41■□□□□ 0.86
TRAIPQ9BWF2 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAIPQ9BWF2 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.41■□□□□ 0.86
TRAIPQ9BWF2 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAIPQ9BWF2 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAIPQ9BWF2 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAIPQ9BWF2 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC20.41■□□□□ 0.86
TRAIPQ9BWF2 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC20.41■□□□□ 0.86
TRAIPQ9BWF2 AC112497.1-201ENST00000624824 639 ntBASIC20.41■□□□□ 0.86
TRAIPQ9BWF2 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAIPQ9BWF2 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRAIPQ9BWF2 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAIPQ9BWF2 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAIPQ9BWF2 HOXB1-202ENST00000577092 1414 ntBASIC20.41■□□□□ 0.86
TRAIPQ9BWF2 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAIPQ9BWF2 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms