Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SKA1Q96BD8 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SKA1Q96BD8 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SKA1Q96BD8 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.15■□□□□ 0.66
SKA1Q96BD8 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SKA1Q96BD8 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.15■□□□□ 0.66
SKA1Q96BD8 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
SKA1Q96BD8 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
SKA1Q96BD8 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SKA1Q96BD8 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SKA1Q96BD8 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.15■□□□□ 0.66
SKA1Q96BD8 AC092647.4-201ENST00000457211 535 ntBASIC19.15■□□□□ 0.66
SKA1Q96BD8 AC063952.2-201ENST00000498792 1227 ntBASIC19.15■□□□□ 0.66
SKA1Q96BD8 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.15■□□□□ 0.66
SKA1Q96BD8 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SKA1Q96BD8 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SKA1Q96BD8 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SKA1Q96BD8 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
SKA1Q96BD8 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SKA1Q96BD8 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SKA1Q96BD8 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SKA1Q96BD8 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SKA1Q96BD8 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC19.15■□□□□ 0.66
SKA1Q96BD8 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SKA1Q96BD8 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SKA1Q96BD8 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SKA1Q96BD8 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SKA1Q96BD8 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SKA1Q96BD8 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SKA1Q96BD8 AC090164.3-201ENST00000610780 2143 ntBASIC19.15■□□□□ 0.66
SKA1Q96BD8 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SKA1Q96BD8 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
SKA1Q96BD8 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.65
SKA1Q96BD8 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SKA1Q96BD8 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SKA1Q96BD8 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SKA1Q96BD8 COPE-203ENST00000351079 907 ntTSL 2 BASIC19.14■□□□□ 0.65
SKA1Q96BD8 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC19.14■□□□□ 0.65
SKA1Q96BD8 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.14■□□□□ 0.65
SKA1Q96BD8 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC19.14■□□□□ 0.65
SKA1Q96BD8 AC008040.2-201ENST00000461049 708 ntBASIC19.14■□□□□ 0.65
SKA1Q96BD8 CA15P1-201ENST00000481698 905 ntBASIC19.14■□□□□ 0.65
SKA1Q96BD8 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC19.14■□□□□ 0.65
SKA1Q96BD8 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SKA1Q96BD8 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC19.14■□□□□ 0.65
SKA1Q96BD8 AC091076.1-201ENST00000610741 619 ntBASIC19.14■□□□□ 0.65
SKA1Q96BD8 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.14■□□□□ 0.65
SKA1Q96BD8 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.14■□□□□ 0.65
SKA1Q96BD8 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SKA1Q96BD8 AC018470.1-201ENST00000624790 3129 ntBASIC19.14■□□□□ 0.65
SKA1Q96BD8 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SKA1Q96BD8 PCDHB18P-201ENST00000524813 2368 ntBASIC19.14■□□□□ 0.65
SKA1Q96BD8 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SKA1Q96BD8 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.14■□□□□ 0.65
SKA1Q96BD8 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC19.14■□□□□ 0.65
SKA1Q96BD8 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SKA1Q96BD8 AL133373.2-201ENST00000623187 2828 ntBASIC19.14■□□□□ 0.65
SKA1Q96BD8 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC19.14■□□□□ 0.65
SKA1Q96BD8 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC19.13■□□□□ 0.65
SKA1Q96BD8 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SKA1Q96BD8 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SKA1Q96BD8 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.13■□□□□ 0.65
SKA1Q96BD8 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SKA1Q96BD8 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.13■□□□□ 0.65
SKA1Q96BD8 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SKA1Q96BD8 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SKA1Q96BD8 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SKA1Q96BD8 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SKA1Q96BD8 AC007663.1-201ENST00000438948 1240 ntBASIC19.13■□□□□ 0.65
SKA1Q96BD8 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC19.13■□□□□ 0.65
SKA1Q96BD8 COX11P1-201ENST00000489116 835 ntBASIC19.13■□□□□ 0.65
SKA1Q96BD8 Z85996.1-201ENST00000494644 937 ntBASIC19.13■□□□□ 0.65
SKA1Q96BD8 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.13■□□□□ 0.65
SKA1Q96BD8 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC19.13■□□□□ 0.65
SKA1Q96BD8 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SKA1Q96BD8 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
SKA1Q96BD8 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SKA1Q96BD8 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SKA1Q96BD8 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SKA1Q96BD8 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SKA1Q96BD8 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.13■□□□□ 0.65
SKA1Q96BD8 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SKA1Q96BD8 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SKA1Q96BD8 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
SKA1Q96BD8 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SKA1Q96BD8 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SKA1Q96BD8 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SKA1Q96BD8 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.13■□□□□ 0.65
SKA1Q96BD8 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 WIZP1-201ENST00000531444 2299 ntBASIC19.12■□□□□ 0.65
SKA1Q96BD8 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
SKA1Q96BD8 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SKA1Q96BD8 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
SKA1Q96BD8 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms