Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SYNE1Q8NF91 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 SDHAP1-207ENST00000440850 2000 ntBASIC5.76□□□□□ -1.49
SYNE1Q8NF91 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 IPPK-202ENST00000375522 882 ntTSL 3 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 AC140113.3-201ENST00000605663 199 ntBASIC5.76□□□□□ -1.49
SYNE1Q8NF91 IER3-202ENST00000376377 1350 ntBASIC5.76□□□□□ -1.49
SYNE1Q8NF91 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 VPS72-207ENST00000640458 689 ntTSL 5 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 NEK4P2-201ENST00000580004 1012 ntBASIC5.76□□□□□ -1.49
SYNE1Q8NF91 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 AP002414.4-201ENST00000589764 1148 ntBASIC5.76□□□□□ -1.49
SYNE1Q8NF91 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 AC018470.1-201ENST00000624790 3129 ntBASIC5.76□□□□□ -1.49
SYNE1Q8NF91 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 FXN-203ENST00000396366 922 ntTSL 2 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC5.76□□□□□ -1.49
SYNE1Q8NF91 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SYNE1Q8NF91 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms