Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 WIZP1-201ENST00000531444 2299 ntBASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 AL445675.2-201ENST00000620291 557 ntBASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP4Q8N3C7 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 DENND3-207ENST00000518347 850 ntTSL 2 BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 TK2-204ENST00000525974 1178 ntTSL 2 BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 C1QBPP2-201ENST00000528754 825 ntBASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
CLIP4Q8N3C7 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP4Q8N3C7 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP4Q8N3C7 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP4Q8N3C7 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP4Q8N3C7 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP4Q8N3C7 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP4Q8N3C7 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP4Q8N3C7 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC17.48■□□□□ 0.39
CLIP4Q8N3C7 NIFKP9-201ENST00000419265 221 ntBASIC17.48■□□□□ 0.39
CLIP4Q8N3C7 RPS2P4-201ENST00000476944 856 ntBASIC17.48■□□□□ 0.39
CLIP4Q8N3C7 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP4Q8N3C7 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
CLIP4Q8N3C7 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC17.48■□□□□ 0.39
CLIP4Q8N3C7 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC17.48■□□□□ 0.39
CLIP4Q8N3C7 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
CLIP4Q8N3C7 CABP2-204ENST00000636477 941 ntTSL 5 BASIC17.48■□□□□ 0.39
CLIP4Q8N3C7 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP4Q8N3C7 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.48■□□□□ 0.39
CLIP4Q8N3C7 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CLIP4Q8N3C7 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms