Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
VRK3Q8IV63 AC009947.2-201ENST00000444014 672 ntBASIC18.24■□□□□ 0.51
VRK3Q8IV63 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VRK3Q8IV63 LINC01023-201ENST00000606054 436 ntBASIC18.24■□□□□ 0.51
VRK3Q8IV63 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
VRK3Q8IV63 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VRK3Q8IV63 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
VRK3Q8IV63 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VRK3Q8IV63 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VRK3Q8IV63 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.24■□□□□ 0.51
VRK3Q8IV63 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VRK3Q8IV63 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
VRK3Q8IV63 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VRK3Q8IV63 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.23■□□□□ 0.51
VRK3Q8IV63 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VRK3Q8IV63 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.23■□□□□ 0.51
VRK3Q8IV63 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.23■□□□□ 0.51
VRK3Q8IV63 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VRK3Q8IV63 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VRK3Q8IV63 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VRK3Q8IV63 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.23■□□□□ 0.51
VRK3Q8IV63 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VRK3Q8IV63 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
VRK3Q8IV63 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
VRK3Q8IV63 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VRK3Q8IV63 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VRK3Q8IV63 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VRK3Q8IV63 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
VRK3Q8IV63 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.23■□□□□ 0.51
VRK3Q8IV63 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VRK3Q8IV63 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
VRK3Q8IV63 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VRK3Q8IV63 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VRK3Q8IV63 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.23■□□□□ 0.51
VRK3Q8IV63 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC18.23■□□□□ 0.51
VRK3Q8IV63 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VRK3Q8IV63 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VRK3Q8IV63 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.23■□□□□ 0.51
VRK3Q8IV63 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
VRK3Q8IV63 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.23■□□□□ 0.51
VRK3Q8IV63 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC18.23■□□□□ 0.51
VRK3Q8IV63 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.23■□□□□ 0.51
VRK3Q8IV63 AC005363.2-201ENST00000618631 242 ntBASIC18.23■□□□□ 0.51
VRK3Q8IV63 AL138966.2-201ENST00000621997 464 ntBASIC18.23■□□□□ 0.51
VRK3Q8IV63 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.23■□□□□ 0.51
VRK3Q8IV63 AC099343.3-201ENST00000605834 2503 ntBASIC18.23■□□□□ 0.51
VRK3Q8IV63 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.23■□□□□ 0.51
VRK3Q8IV63 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VRK3Q8IV63 AC034236.2-201ENST00000606662 1610 ntBASIC18.23■□□□□ 0.51
VRK3Q8IV63 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VRK3Q8IV63 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VRK3Q8IV63 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VRK3Q8IV63 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VRK3Q8IV63 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
VRK3Q8IV63 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VRK3Q8IV63 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
VRK3Q8IV63 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.22■□□□□ 0.51
VRK3Q8IV63 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VRK3Q8IV63 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VRK3Q8IV63 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VRK3Q8IV63 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VRK3Q8IV63 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
VRK3Q8IV63 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
VRK3Q8IV63 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
VRK3Q8IV63 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VRK3Q8IV63 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VRK3Q8IV63 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
VRK3Q8IV63 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VRK3Q8IV63 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VRK3Q8IV63 TERF1P1-201ENST00000311003 1181 ntBASIC18.22■□□□□ 0.51
VRK3Q8IV63 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VRK3Q8IV63 AC005521.1-201ENST00000393351 872 ntBASIC18.22■□□□□ 0.51
VRK3Q8IV63 AC113347.1-201ENST00000413321 391 ntBASIC18.22■□□□□ 0.51
VRK3Q8IV63 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.22■□□□□ 0.51
VRK3Q8IV63 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.22■□□□□ 0.51
VRK3Q8IV63 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VRK3Q8IV63 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VRK3Q8IV63 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.22■□□□□ 0.51
VRK3Q8IV63 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
VRK3Q8IV63 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VRK3Q8IV63 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VRK3Q8IV63 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
VRK3Q8IV63 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.22■□□□□ 0.51
VRK3Q8IV63 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VRK3Q8IV63 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.22■□□□□ 0.51
VRK3Q8IV63 AC009113.1-201ENST00000570267 2443 ntBASIC18.22■□□□□ 0.51
VRK3Q8IV63 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.22■□□□□ 0.51
VRK3Q8IV63 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VRK3Q8IV63 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VRK3Q8IV63 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
VRK3Q8IV63 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.22■□□□□ 0.51
VRK3Q8IV63 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.22■□□□□ 0.51
VRK3Q8IV63 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
VRK3Q8IV63 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
VRK3Q8IV63 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.22■□□□□ 0.51
VRK3Q8IV63 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VRK3Q8IV63 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.22■□□□□ 0.51
VRK3Q8IV63 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
VRK3Q8IV63 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
VRK3Q8IV63 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms