Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RFX4Q33E94 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
RFX4Q33E94 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RFX4Q33E94 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RFX4Q33E94 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
RFX4Q33E94 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RFX4Q33E94 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RFX4Q33E94 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.39■□□□□ 0.37
RFX4Q33E94 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RFX4Q33E94 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RFX4Q33E94 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC17.39■□□□□ 0.37
RFX4Q33E94 TSPY21P-201ENST00000433481 731 ntBASIC17.39■□□□□ 0.37
RFX4Q33E94 NCF1B-203ENST00000435988 1254 ntBASIC17.39■□□□□ 0.37
RFX4Q33E94 SLC29A4P2-201ENST00000504749 1089 ntBASIC17.39■□□□□ 0.37
RFX4Q33E94 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RFX4Q33E94 PNMA6B-201ENST00000538162 1200 ntBASIC17.39■□□□□ 0.37
RFX4Q33E94 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC17.39■□□□□ 0.37
RFX4Q33E94 WT1-AS_3.1-201ENST00000613262 234 ntBASIC17.39■□□□□ 0.37
RFX4Q33E94 AC120498.8-201ENST00000614275 531 ntBASIC17.39■□□□□ 0.37
RFX4Q33E94 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
RFX4Q33E94 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.39■□□□□ 0.37
RFX4Q33E94 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
RFX4Q33E94 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RFX4Q33E94 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RFX4Q33E94 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
RFX4Q33E94 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RFX4Q33E94 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX4Q33E94 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX4Q33E94 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.38■□□□□ 0.37
RFX4Q33E94 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.38■□□□□ 0.37
RFX4Q33E94 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RFX4Q33E94 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
RFX4Q33E94 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX4Q33E94 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX4Q33E94 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RFX4Q33E94 AC134043.2-201ENST00000624206 2238 ntBASIC17.38■□□□□ 0.37
RFX4Q33E94 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX4Q33E94 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX4Q33E94 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC17.38■□□□□ 0.37
RFX4Q33E94 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC17.38■□□□□ 0.37
RFX4Q33E94 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC17.38■□□□□ 0.37
RFX4Q33E94 KRT18P16-201ENST00000510337 1294 ntBASIC17.38■□□□□ 0.37
RFX4Q33E94 AC060766.5-201ENST00000590539 871 ntBASIC17.38■□□□□ 0.37
RFX4Q33E94 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.38■□□□□ 0.37
RFX4Q33E94 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RFX4Q33E94 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX4Q33E94 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX4Q33E94 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC17.38■□□□□ 0.37
RFX4Q33E94 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX4Q33E94 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.38■□□□□ 0.37
RFX4Q33E94 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX4Q33E94 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX4Q33E94 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX4Q33E94 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX4Q33E94 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX4Q33E94 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX4Q33E94 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX4Q33E94 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
RFX4Q33E94 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX4Q33E94 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX4Q33E94 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX4Q33E94 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX4Q33E94 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RFX4Q33E94 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX4Q33E94 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX4Q33E94 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX4Q33E94 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC17.37■□□□□ 0.37
RFX4Q33E94 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC17.37■□□□□ 0.37
RFX4Q33E94 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC17.37■□□□□ 0.37
RFX4Q33E94 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC17.37■□□□□ 0.37
RFX4Q33E94 TUBB8P6-201ENST00000436895 1288 ntBASIC17.37■□□□□ 0.37
RFX4Q33E94 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC17.37■□□□□ 0.37
RFX4Q33E94 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC17.37■□□□□ 0.37
RFX4Q33E94 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC17.37■□□□□ 0.37
RFX4Q33E94 AL121829.2-201ENST00000620908 328 ntBASIC17.37■□□□□ 0.37
RFX4Q33E94 PFKL-212ENST00000628044 129 ntTSL 3 BASIC17.37■□□□□ 0.37
RFX4Q33E94 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.37■□□□□ 0.37
RFX4Q33E94 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
RFX4Q33E94 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX4Q33E94 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RFX4Q33E94 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RFX4Q33E94 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX4Q33E94 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RFX4Q33E94 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX4Q33E94 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX4Q33E94 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX4Q33E94 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX4Q33E94 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX4Q33E94 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RFX4Q33E94 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RFX4Q33E94 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.36■□□□□ 0.37
RFX4Q33E94 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RFX4Q33E94 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RFX4Q33E94 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RFX4Q33E94 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RFX4Q33E94 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RFX4Q33E94 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RFX4Q33E94 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC17.36■□□□□ 0.37
RFX4Q33E94 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC17.36■□□□□ 0.37
RFX4Q33E94 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms