Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC13.35□□□□□ -0.27
COL7A1Q02388 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC13.35□□□□□ -0.27
COL7A1Q02388 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL7A1Q02388 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC13.35□□□□□ -0.27
COL7A1Q02388 SPCS2P1-201ENST00000561636 679 ntBASIC13.35□□□□□ -0.27
COL7A1Q02388 MIR3687-2-201ENST00000577708 61 ntBASIC13.35□□□□□ -0.27
COL7A1Q02388 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC13.35□□□□□ -0.27
COL7A1Q02388 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL7A1Q02388 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL7A1Q02388 MIR3687-1-201ENST00000614492 61 ntBASIC13.35□□□□□ -0.27
COL7A1Q02388 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL7A1Q02388 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
COL7A1Q02388 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL7A1Q02388 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
COL7A1Q02388 AP005117.1-201ENST00000584346 1413 ntBASIC13.35□□□□□ -0.27
COL7A1Q02388 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL7A1Q02388 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL7A1Q02388 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC13.35□□□□□ -0.27
COL7A1Q02388 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL7A1Q02388 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL7A1Q02388 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL7A1Q02388 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
COL7A1Q02388 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL7A1Q02388 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
COL7A1Q02388 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
COL7A1Q02388 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
COL7A1Q02388 AL512353.2-201ENST00000448759 1962 ntBASIC13.34□□□□□ -0.27
COL7A1Q02388 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL7A1Q02388 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL7A1Q02388 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL7A1Q02388 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
COL7A1Q02388 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL7A1Q02388 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC13.34□□□□□ -0.27
COL7A1Q02388 HLA-J-203ENST00000494367 1087 ntBASIC13.34□□□□□ -0.27
COL7A1Q02388 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC13.34□□□□□ -0.27
COL7A1Q02388 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC13.34□□□□□ -0.27
COL7A1Q02388 CAND2-206ENST00000626378 333 ntTSL 5 BASIC13.34□□□□□ -0.27
COL7A1Q02388 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC13.34□□□□□ -0.27
COL7A1Q02388 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL7A1Q02388 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL7A1Q02388 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
COL7A1Q02388 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
COL7A1Q02388 RBM17P3-201ENST00000417687 1192 ntBASIC13.34□□□□□ -0.27
COL7A1Q02388 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL7A1Q02388 DNAJB3-201ENST00000446806 729 ntBASIC13.34□□□□□ -0.27
COL7A1Q02388 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL7A1Q02388 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL7A1Q02388 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
COL7A1Q02388 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC13.34□□□□□ -0.27
COL7A1Q02388 AL162377.1-201ENST00000618844 1793 ntBASIC13.34□□□□□ -0.27
COL7A1Q02388 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC13.34□□□□□ -0.27
COL7A1Q02388 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
COL7A1Q02388 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
COL7A1Q02388 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
COL7A1Q02388 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.27
COL7A1Q02388 AC104109.2-201ENST00000602919 1418 ntBASIC13.33□□□□□ -0.27
COL7A1Q02388 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC13.33□□□□□ -0.27
COL7A1Q02388 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
COL7A1Q02388 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
COL7A1Q02388 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC13.33□□□□□ -0.27
COL7A1Q02388 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC13.33□□□□□ -0.27
COL7A1Q02388 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC13.33□□□□□ -0.27
COL7A1Q02388 RNA5SP415-201ENST00000517246 115 ntBASIC13.33□□□□□ -0.27
COL7A1Q02388 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC13.33□□□□□ -0.27
COL7A1Q02388 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC13.33□□□□□ -0.27
COL7A1Q02388 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL7A1Q02388 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
COL7A1Q02388 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
COL7A1Q02388 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL7A1Q02388 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL7A1Q02388 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL7A1Q02388 ZNF259P1-201ENST00000407656 1365 ntBASIC13.33□□□□□ -0.28
COL7A1Q02388 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC13.33□□□□□ -0.28
COL7A1Q02388 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL7A1Q02388 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC13.33□□□□□ -0.28
COL7A1Q02388 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL7A1Q02388 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL7A1Q02388 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC13.33□□□□□ -0.28
COL7A1Q02388 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC13.33□□□□□ -0.28
COL7A1Q02388 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL7A1Q02388 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL7A1Q02388 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL7A1Q02388 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL7A1Q02388 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL7A1Q02388 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC13.33□□□□□ -0.28
COL7A1Q02388 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC13.33□□□□□ -0.28
COL7A1Q02388 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC13.33□□□□□ -0.28
COL7A1Q02388 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL7A1Q02388 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC13.33□□□□□ -0.28
COL7A1Q02388 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL7A1Q02388 HIST2H3DP1-201ENST00000401004 416 ntBASIC13.33□□□□□ -0.28
COL7A1Q02388 RPS8P6-201ENST00000426177 609 ntBASIC13.33□□□□□ -0.28
COL7A1Q02388 RPS2P1-201ENST00000434010 821 ntBASIC13.33□□□□□ -0.28
COL7A1Q02388 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL7A1Q02388 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL7A1Q02388 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC13.33□□□□□ -0.28
COL7A1Q02388 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL7A1Q02388 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC13.33□□□□□ -0.28
COL7A1Q02388 AC083906.6-201ENST00000641366 219 ntBASIC13.33□□□□□ -0.28
COL7A1Q02388 AC079781.4-201ENST00000641908 219 ntBASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms