Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC15.08■□□□□ 0
CX3CL1P78423 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CX3CL1P78423 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CX3CL1P78423 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
CX3CL1P78423 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
CX3CL1P78423 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CX3CL1P78423 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CX3CL1P78423 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CX3CL1P78423 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CX3CL1P78423 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC15.08■□□□□ 0
CX3CL1P78423 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CX3CL1P78423 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CX3CL1P78423 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
CX3CL1P78423 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CX3CL1P78423 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CX3CL1P78423 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CX3CL1P78423 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
CX3CL1P78423 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
CX3CL1P78423 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
CX3CL1P78423 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC15.07■□□□□ 0
CX3CL1P78423 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC15.07■□□□□ 0
CX3CL1P78423 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC15.07■□□□□ 0
CX3CL1P78423 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC15.07■□□□□ 0
CX3CL1P78423 DHDH-203ENST00000522614 776 ntTSL 5 BASIC15.07■□□□□ 0
CX3CL1P78423 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC15.07■□□□□ 0
CX3CL1P78423 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
CX3CL1P78423 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC15.07■□□□□ 0
CX3CL1P78423 CKBP1-201ENST00000565489 1086 ntBASIC15.07■□□□□ 0
CX3CL1P78423 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC15.07■□□□□ 0
CX3CL1P78423 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CX3CL1P78423 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC15.07■□□□□ 0
CX3CL1P78423 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC15.07■□□□□ 0
CX3CL1P78423 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC15.07■□□□□ 0
CX3CL1P78423 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC15.07■□□□□ 0
CX3CL1P78423 DGCR10-201ENST00000609839 495 ntBASIC15.07■□□□□ 0
CX3CL1P78423 AC066615.1-201ENST00000640911 628 ntBASIC15.07■□□□□ 0
CX3CL1P78423 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC15.07■□□□□ 0
CX3CL1P78423 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
CX3CL1P78423 KRT17P2-201ENST00000300992 1314 ntBASIC15.07■□□□□ 0
CX3CL1P78423 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CX3CL1P78423 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CX3CL1P78423 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CX3CL1P78423 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
CX3CL1P78423 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
CX3CL1P78423 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC15.07■□□□□ 0
CX3CL1P78423 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
CX3CL1P78423 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
CX3CL1P78423 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
CX3CL1P78423 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC15.07■□□□□ 0
CX3CL1P78423 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
CX3CL1P78423 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CX3CL1P78423 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC15.06■□□□□ 0
CX3CL1P78423 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CX3CL1P78423 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC15.06■□□□□ 0
CX3CL1P78423 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC15.06■□□□□ 0
CX3CL1P78423 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CX3CL1P78423 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC15.06■□□□□ 0
CX3CL1P78423 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC15.06■□□□□ 0
CX3CL1P78423 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC15.06■□□□□ 0
CX3CL1P78423 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
CX3CL1P78423 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
CX3CL1P78423 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
CX3CL1P78423 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
CX3CL1P78423 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC15.06■□□□□ 0
CX3CL1P78423 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
CX3CL1P78423 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC15.06■□□□□ 0
CX3CL1P78423 AC093827.2-201ENST00000512654 315 ntBASIC15.06■□□□□ 0
CX3CL1P78423 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC15.06■□□□□ 0
CX3CL1P78423 SLC25A1P4-201ENST00000567977 778 ntBASIC15.06■□□□□ 0
CX3CL1P78423 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC15.06■□□□□ 0
CX3CL1P78423 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
CX3CL1P78423 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
CX3CL1P78423 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CX3CL1P78423 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
CX3CL1P78423 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CX3CL1P78423 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC15.06■□□□□ 0
CX3CL1P78423 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC15.06■□□□□ 0
CX3CL1P78423 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC15.06■□□□□ 0
CX3CL1P78423 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC15.06■□□□□ 0
CX3CL1P78423 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
CX3CL1P78423 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CX3CL1P78423 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
CX3CL1P78423 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC15.06■□□□□ 0
CX3CL1P78423 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
CX3CL1P78423 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
CX3CL1P78423 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
CX3CL1P78423 AL390961.4-201ENST00000623958 2535 ntBASIC15.05■□□□□ 0
CX3CL1P78423 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
CX3CL1P78423 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC15.05■□□□□ 0
CX3CL1P78423 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
CX3CL1P78423 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
CX3CL1P78423 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC15.05■□□□□ 0
CX3CL1P78423 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CX3CL1P78423 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
CX3CL1P78423 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
CX3CL1P78423 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
CX3CL1P78423 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC15.05■□□□□ -0
CX3CL1P78423 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC15.05■□□□□ -0
CX3CL1P78423 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
CX3CL1P78423 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC15.05■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms