Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MSX2P35548 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSX2P35548 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSX2P35548 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSX2P35548 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MSX2P35548 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSX2P35548 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
MSX2P35548 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSX2P35548 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC17.84■□□□□ 0.45
MSX2P35548 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC17.84■□□□□ 0.45
MSX2P35548 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MSX2P35548 OR2A1-AS1-201ENST00000462305 773 ntBASIC17.84■□□□□ 0.45
MSX2P35548 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC17.84■□□□□ 0.45
MSX2P35548 PHB2-213ENST00000546111 858 ntTSL 2 BASIC17.84■□□□□ 0.45
MSX2P35548 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC17.84■□□□□ 0.45
MSX2P35548 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSX2P35548 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSX2P35548 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSX2P35548 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
MSX2P35548 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSX2P35548 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSX2P35548 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MSX2P35548 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSX2P35548 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSX2P35548 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
MSX2P35548 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
MSX2P35548 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
MSX2P35548 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
MSX2P35548 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
MSX2P35548 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
MSX2P35548 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
MSX2P35548 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
MSX2P35548 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
MSX2P35548 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
MSX2P35548 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
MSX2P35548 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
MSX2P35548 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
MSX2P35548 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSX2P35548 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
MSX2P35548 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
MSX2P35548 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.83■□□□□ 0.44
MSX2P35548 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC17.83■□□□□ 0.44
MSX2P35548 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC17.83■□□□□ 0.44
MSX2P35548 KRT18P16-201ENST00000510337 1294 ntBASIC17.83■□□□□ 0.44
MSX2P35548 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
MSX2P35548 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
MSX2P35548 PNN-205ENST00000556530 601 ntTSL 2 BASIC17.83■□□□□ 0.44
MSX2P35548 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC17.83■□□□□ 0.44
MSX2P35548 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC17.83■□□□□ 0.44
MSX2P35548 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSX2P35548 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.83■□□□□ 0.44
MSX2P35548 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
MSX2P35548 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
MSX2P35548 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
MSX2P35548 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
MSX2P35548 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
MSX2P35548 HEIH-201ENST00000623091 1652 ntBASIC17.83■□□□□ 0.44
MSX2P35548 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.83■□□□□ 0.44
MSX2P35548 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSX2P35548 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSX2P35548 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
MSX2P35548 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
MSX2P35548 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
MSX2P35548 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
MSX2P35548 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
MSX2P35548 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSX2P35548 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.82■□□□□ 0.44
MSX2P35548 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
MSX2P35548 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
MSX2P35548 BX276092.2-201ENST00000417668 665 ntBASIC17.82■□□□□ 0.44
MSX2P35548 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC17.82■□□□□ 0.44
MSX2P35548 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC17.82■□□□□ 0.44
MSX2P35548 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC17.82■□□□□ 0.44
MSX2P35548 PLD4-205ENST00000553861 667 ntTSL 2 BASIC17.82■□□□□ 0.44
MSX2P35548 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.82■□□□□ 0.44
MSX2P35548 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC17.82■□□□□ 0.44
MSX2P35548 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.82■□□□□ 0.44
MSX2P35548 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.82■□□□□ 0.44
MSX2P35548 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
MSX2P35548 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
MSX2P35548 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
MSX2P35548 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
MSX2P35548 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
MSX2P35548 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSX2P35548 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSX2P35548 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
MSX2P35548 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.81■□□□□ 0.44
MSX2P35548 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.81■□□□□ 0.44
MSX2P35548 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.81■□□□□ 0.44
MSX2P35548 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSX2P35548 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.81■□□□□ 0.44
MSX2P35548 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
MSX2P35548 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
MSX2P35548 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC17.81■□□□□ 0.44
MSX2P35548 TUBB8P6-201ENST00000436895 1288 ntBASIC17.81■□□□□ 0.44
MSX2P35548 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC17.81■□□□□ 0.44
MSX2P35548 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.81■□□□□ 0.44
MSX2P35548 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
MSX2P35548 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.81■□□□□ 0.44
MSX2P35548 AC093677.2-201ENST00000600169 1863 ntBASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms