Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC104581.1-202ENST00000635932 2618 ntBASIC22.05■■□□□ 1.12
HMGB1P09429 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC22.05■■□□□ 1.12
HMGB1P09429 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
HMGB1P09429 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
HMGB1P09429 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC22.04■■□□□ 1.12
HMGB1P09429 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
HMGB1P09429 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC22.04■■□□□ 1.12
HMGB1P09429 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
HMGB1P09429 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
HMGB1P09429 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
HMGB1P09429 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
HMGB1P09429 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
HMGB1P09429 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
HMGB1P09429 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC22.04■■□□□ 1.12
HMGB1P09429 EGLN1P1-201ENST00000531623 762 ntBASIC22.04■■□□□ 1.12
HMGB1P09429 AC010653.2-201ENST00000623505 997 ntBASIC22.04■■□□□ 1.12
HMGB1P09429 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
HMGB1P09429 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
HMGB1P09429 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
HMGB1P09429 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC22.04■■□□□ 1.12
HMGB1P09429 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
HMGB1P09429 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
HMGB1P09429 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
HMGB1P09429 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
HMGB1P09429 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
HMGB1P09429 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
HMGB1P09429 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
HMGB1P09429 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
HMGB1P09429 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC22.03■■□□□ 1.12
HMGB1P09429 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC22.03■■□□□ 1.12
HMGB1P09429 ELP6-205ENST00000439305 880 ntTSL 2 BASIC22.03■■□□□ 1.12
HMGB1P09429 AC093827.2-201ENST00000512654 315 ntBASIC22.03■■□□□ 1.12
HMGB1P09429 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC22.03■■□□□ 1.12
HMGB1P09429 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC22.03■■□□□ 1.12
HMGB1P09429 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC22.03■■□□□ 1.12
HMGB1P09429 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
HMGB1P09429 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
HMGB1P09429 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
HMGB1P09429 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC22.03■■□□□ 1.12
HMGB1P09429 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
HMGB1P09429 MYLKP1-201ENST00000509077 1580 ntBASIC22.03■■□□□ 1.12
HMGB1P09429 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
HMGB1P09429 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
HMGB1P09429 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
HMGB1P09429 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
HMGB1P09429 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
HMGB1P09429 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.12
HMGB1P09429 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
HMGB1P09429 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC22.02■■□□□ 1.12
HMGB1P09429 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
HMGB1P09429 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC22.02■■□□□ 1.12
HMGB1P09429 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
HMGB1P09429 AC007663.1-201ENST00000438948 1240 ntBASIC22.02■■□□□ 1.12
HMGB1P09429 PHB2-202ENST00000440277 996 ntTSL 5 BASIC22.02■■□□□ 1.12
HMGB1P09429 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
HMGB1P09429 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
HMGB1P09429 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC22.02■■□□□ 1.12
HMGB1P09429 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
HMGB1P09429 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
HMGB1P09429 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC22.02■■□□□ 1.12
HMGB1P09429 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
HMGB1P09429 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
HMGB1P09429 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.11
HMGB1P09429 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
HMGB1P09429 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
HMGB1P09429 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
HMGB1P09429 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
HMGB1P09429 MMP23A-201ENST00000234610 1017 ntBASIC22.01■■□□□ 1.11
HMGB1P09429 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC22.01■■□□□ 1.11
HMGB1P09429 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
HMGB1P09429 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
HMGB1P09429 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC22.01■■□□□ 1.11
HMGB1P09429 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC22.01■■□□□ 1.11
HMGB1P09429 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC22.01■■□□□ 1.11
HMGB1P09429 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
HMGB1P09429 TSPY15P-201ENST00000457163 923 ntBASIC22.01■■□□□ 1.11
HMGB1P09429 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC22.01■■□□□ 1.11
HMGB1P09429 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
HMGB1P09429 CFL2-205ENST00000555765 632 ntTSL 2 BASIC22.01■■□□□ 1.11
HMGB1P09429 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC22.01■■□□□ 1.11
HMGB1P09429 WWOX-216ENST00000569818 525 ntBASIC22.01■■□□□ 1.11
HMGB1P09429 AC066615.1-201ENST00000640911 628 ntBASIC22.01■■□□□ 1.11
HMGB1P09429 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC22.01■■□□□ 1.11
HMGB1P09429 EFTUD1P1-204ENST00000560401 1798 ntBASIC22.01■■□□□ 1.11
HMGB1P09429 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
HMGB1P09429 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
HMGB1P09429 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
HMGB1P09429 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
HMGB1P09429 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
HMGB1P09429 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC22■■□□□ 1.11
HMGB1P09429 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
HMGB1P09429 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
HMGB1P09429 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
HMGB1P09429 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
HMGB1P09429 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC22■■□□□ 1.11
HMGB1P09429 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC22■■□□□ 1.11
HMGB1P09429 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC22■■□□□ 1.11
HMGB1P09429 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
HMGB1P09429 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC22■■□□□ 1.11
HMGB1P09429 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms