Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL1P09341 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL1P09341 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC14.51□□□□□ -0.09
CXCL1P09341 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL1P09341 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL1P09341 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL1P09341 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC14.51□□□□□ -0.09
CXCL1P09341 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC14.5□□□□□ -0.09
CXCL1P09341 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC14.5□□□□□ -0.09
CXCL1P09341 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CXCL1P09341 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CXCL1P09341 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CXCL1P09341 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CXCL1P09341 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CXCL1P09341 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC14.5□□□□□ -0.09
CXCL1P09341 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
CXCL1P09341 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CXCL1P09341 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
CXCL1P09341 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
CXCL1P09341 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC14.5□□□□□ -0.09
CXCL1P09341 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CXCL1P09341 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CXCL1P09341 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CXCL1P09341 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC14.5□□□□□ -0.09
CXCL1P09341 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CXCL1P09341 COX20-201ENST00000366528 568 ntTSL 2 BASIC14.5□□□□□ -0.09
CXCL1P09341 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CXCL1P09341 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CXCL1P09341 PBX1-209ENST00000485769 834 ntTSL 2 BASIC14.5□□□□□ -0.09
CXCL1P09341 AL591742.1-201ENST00000604433 565 ntBASIC14.5□□□□□ -0.09
CXCL1P09341 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CXCL1P09341 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC14.5□□□□□ -0.09
CXCL1P09341 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC14.5□□□□□ -0.09
CXCL1P09341 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CXCL1P09341 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CXCL1P09341 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC14.5□□□□□ -0.09
CXCL1P09341 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CXCL1P09341 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC14.5□□□□□ -0.09
CXCL1P09341 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CXCL1P09341 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
CXCL1P09341 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CXCL1P09341 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CXCL1P09341 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC14.5□□□□□ -0.09
CXCL1P09341 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CXCL1P09341 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
CXCL1P09341 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CXCL1P09341 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CXCL1P09341 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC14.5□□□□□ -0.09
CXCL1P09341 LINC00554-201ENST00000564841 3011 ntBASIC14.5□□□□□ -0.09
CXCL1P09341 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
CXCL1P09341 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CXCL1P09341 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC14.49□□□□□ -0.09
CXCL1P09341 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CXCL1P09341 AP001094.4-201ENST00000579008 2176 ntBASIC14.49□□□□□ -0.09
CXCL1P09341 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
CXCL1P09341 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC14.49□□□□□ -0.09
CXCL1P09341 HLA-G-202ENST00000376815 851 ntBASIC14.49□□□□□ -0.09
CXCL1P09341 HLA-G-203ENST00000376818 1127 ntBASIC14.49□□□□□ -0.09
CXCL1P09341 KRT19P1-201ENST00000405746 1186 ntBASIC14.49□□□□□ -0.09
CXCL1P09341 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
CXCL1P09341 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC14.49□□□□□ -0.09
CXCL1P09341 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC14.49□□□□□ -0.09
CXCL1P09341 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC14.49□□□□□ -0.09
CXCL1P09341 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
CXCL1P09341 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC14.49□□□□□ -0.09
CXCL1P09341 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CXCL1P09341 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CXCL1P09341 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CXCL1P09341 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CXCL1P09341 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CXCL1P09341 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
CXCL1P09341 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC14.49□□□□□ -0.09
CXCL1P09341 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CXCL1P09341 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CXCL1P09341 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC14.49□□□□□ -0.09
CXCL1P09341 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
CXCL1P09341 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
CXCL1P09341 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC14.49□□□□□ -0.09
CXCL1P09341 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
CXCL1P09341 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CXCL1P09341 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
CXCL1P09341 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC14.49□□□□□ -0.09
CXCL1P09341 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CXCL1P09341 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CXCL1P09341 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
CXCL1P09341 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL1P09341 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL1P09341 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL1P09341 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL1P09341 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL1P09341 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL1P09341 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL1P09341 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC14.48□□□□□ -0.09
CXCL1P09341 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC14.48□□□□□ -0.09
CXCL1P09341 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL1P09341 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL1P09341 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC14.48□□□□□ -0.09
CXCL1P09341 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC14.48□□□□□ -0.09
CXCL1P09341 AC142381.2-201ENST00000566120 298 ntBASIC14.48□□□□□ -0.09
CXCL1P09341 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC14.48□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms