Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.56■□□□□ 0.4
LDB3O75112 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
LDB3O75112 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDB3O75112 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LDB3O75112 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.56■□□□□ 0.4
LDB3O75112 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDB3O75112 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDB3O75112 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDB3O75112 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LDB3O75112 AC113347.1-201ENST00000413321 391 ntBASIC17.56■□□□□ 0.4
LDB3O75112 LIN28AP1-201ENST00000429574 405 ntBASIC17.56■□□□□ 0.4
LDB3O75112 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
LDB3O75112 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.56■□□□□ 0.4
LDB3O75112 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDB3O75112 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
LDB3O75112 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.56■□□□□ 0.4
LDB3O75112 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.56■□□□□ 0.4
LDB3O75112 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDB3O75112 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDB3O75112 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDB3O75112 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDB3O75112 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDB3O75112 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDB3O75112 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDB3O75112 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDB3O75112 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDB3O75112 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.56■□□□□ 0.4
LDB3O75112 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LDB3O75112 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LDB3O75112 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.55■□□□□ 0.4
LDB3O75112 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.55■□□□□ 0.4
LDB3O75112 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LDB3O75112 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
LDB3O75112 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LDB3O75112 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.55■□□□□ 0.4
LDB3O75112 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LDB3O75112 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LDB3O75112 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LDB3O75112 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LDB3O75112 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.55■□□□□ 0.4
LDB3O75112 AC005521.1-201ENST00000393351 872 ntBASIC17.55■□□□□ 0.4
LDB3O75112 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
LDB3O75112 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LDB3O75112 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LDB3O75112 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LDB3O75112 ATP5G1P1-201ENST00000448724 379 ntBASIC17.55■□□□□ 0.4
LDB3O75112 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.55■□□□□ 0.4
LDB3O75112 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LDB3O75112 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.55■□□□□ 0.4
LDB3O75112 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LDB3O75112 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
LDB3O75112 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LDB3O75112 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.55■□□□□ 0.4
LDB3O75112 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.55■□□□□ 0.4
LDB3O75112 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LDB3O75112 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LDB3O75112 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.55■□□□□ 0.4
LDB3O75112 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LDB3O75112 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LDB3O75112 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
LDB3O75112 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.54■□□□□ 0.4
LDB3O75112 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDB3O75112 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LDB3O75112 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
LDB3O75112 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDB3O75112 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDB3O75112 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDB3O75112 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LDB3O75112 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDB3O75112 TERF1P1-201ENST00000311003 1181 ntBASIC17.54■□□□□ 0.4
LDB3O75112 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
LDB3O75112 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.54■□□□□ 0.4
LDB3O75112 MIR564-202ENST00000385049 94 ntBASIC17.54■□□□□ 0.4
LDB3O75112 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LDB3O75112 AL137013.1-201ENST00000432946 1228 ntBASIC17.54■□□□□ 0.4
LDB3O75112 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.54■□□□□ 0.4
LDB3O75112 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.54■□□□□ 0.4
LDB3O75112 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.54■□□□□ 0.4
LDB3O75112 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.54■□□□□ 0.4
LDB3O75112 WWOX-216ENST00000569818 525 ntBASIC17.54■□□□□ 0.4
LDB3O75112 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
LDB3O75112 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDB3O75112 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDB3O75112 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDB3O75112 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDB3O75112 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDB3O75112 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.54■□□□□ 0.4
LDB3O75112 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDB3O75112 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDB3O75112 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDB3O75112 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDB3O75112 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDB3O75112 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDB3O75112 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.53■□□□□ 0.4
LDB3O75112 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LDB3O75112 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
LDB3O75112 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.53■□□□□ 0.4
LDB3O75112 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LDB3O75112 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LDB3O75112 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms