Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC20.99■□□□□ 0.95
MSH4O15457 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH4O15457 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH4O15457 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MSH4O15457 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH4O15457 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC20.98■□□□□ 0.95
MSH4O15457 KRT8P50-201ENST00000562022 1438 ntBASIC20.98■□□□□ 0.95
MSH4O15457 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
MSH4O15457 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH4O15457 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MSH4O15457 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MSH4O15457 SAPCD2P2-201ENST00000431719 1174 ntBASIC20.98■□□□□ 0.95
MSH4O15457 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MSH4O15457 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC20.98■□□□□ 0.95
MSH4O15457 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
MSH4O15457 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC20.98■□□□□ 0.95
MSH4O15457 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC20.98■□□□□ 0.95
MSH4O15457 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH4O15457 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MSH4O15457 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MSH4O15457 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH4O15457 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MSH4O15457 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
MSH4O15457 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSH4O15457 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSH4O15457 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
MSH4O15457 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MSH4O15457 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSH4O15457 RASA4DP-201ENST00000460726 1199 ntBASIC20.97■□□□□ 0.95
MSH4O15457 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC20.97■□□□□ 0.95
MSH4O15457 LINC01238-205ENST00000567549 1107 ntBASIC20.97■□□□□ 0.95
MSH4O15457 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSH4O15457 DFFB-212ENST00000625756 649 ntTSL 5 BASIC20.97■□□□□ 0.95
MSH4O15457 CYP51A1P1-201ENST00000492267 1507 ntBASIC20.97■□□□□ 0.95
MSH4O15457 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC20.97■□□□□ 0.95
MSH4O15457 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSH4O15457 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC20.97■□□□□ 0.95
MSH4O15457 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MSH4O15457 AL031598.1-201ENST00000561511 1773 ntBASIC20.97■□□□□ 0.95
MSH4O15457 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC20.97■□□□□ 0.95
MSH4O15457 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
MSH4O15457 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSH4O15457 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
MSH4O15457 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC20.96■□□□□ 0.95
MSH4O15457 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
MSH4O15457 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH4O15457 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH4O15457 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
MSH4O15457 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH4O15457 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC20.96■□□□□ 0.95
MSH4O15457 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC20.96■□□□□ 0.95
MSH4O15457 MIR3917-201ENST00000580971 93 ntBASIC20.96■□□□□ 0.95
MSH4O15457 AC010240.3-201ENST00000607688 395 ntBASIC20.96■□□□□ 0.95
MSH4O15457 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.96■□□□□ 0.95
MSH4O15457 HYMAI.1-201ENST00000620949 238 ntBASIC20.96■□□□□ 0.95
MSH4O15457 AL157888.1-201ENST00000631930 593 ntBASIC20.96■□□□□ 0.95
MSH4O15457 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH4O15457 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.96■□□□□ 0.95
MSH4O15457 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
MSH4O15457 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
MSH4O15457 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH4O15457 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
MSH4O15457 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH4O15457 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH4O15457 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC20.96■□□□□ 0.95
MSH4O15457 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
MSH4O15457 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.95■□□□□ 0.94
MSH4O15457 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
MSH4O15457 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
MSH4O15457 ANO7L1-203ENST00000602586 1720 ntBASIC20.95■□□□□ 0.94
MSH4O15457 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
MSH4O15457 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH4O15457 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC20.95■□□□□ 0.94
MSH4O15457 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH4O15457 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH4O15457 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
MSH4O15457 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH4O15457 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH4O15457 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
MSH4O15457 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.95■□□□□ 0.94
MSH4O15457 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC20.95■□□□□ 0.94
MSH4O15457 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
MSH4O15457 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH4O15457 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20.95■□□□□ 0.94
MSH4O15457 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
MSH4O15457 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.95■□□□□ 0.94
MSH4O15457 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC20.95■□□□□ 0.94
MSH4O15457 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
MSH4O15457 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
MSH4O15457 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH4O15457 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.95■□□□□ 0.94
MSH4O15457 AC087289.5-201ENST00000586076 3175 ntBASIC20.95■□□□□ 0.94
MSH4O15457 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH4O15457 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH4O15457 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
MSH4O15457 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH4O15457 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH4O15457 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.94■□□□□ 0.94
MSH4O15457 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
MSH4O15457 ARMC10P1-201ENST00000313754 855 ntBASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms