Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGN4O00479 GCSHP5-201ENST00000443090 522 ntBASIC17.4■□□□□ 0.38
HMGN4O00479 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HMGN4O00479 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HMGN4O00479 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGN4O00479 NUDT16P1-203ENST00000513809 620 ntBASIC17.4■□□□□ 0.38
HMGN4O00479 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HMGN4O00479 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.4■□□□□ 0.38
HMGN4O00479 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.4■□□□□ 0.38
HMGN4O00479 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HMGN4O00479 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGN4O00479 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
HMGN4O00479 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGN4O00479 NOC2LP1-202ENST00000452600 2235 ntBASIC17.4■□□□□ 0.38
HMGN4O00479 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGN4O00479 AL162741.1-201ENST00000565563 1558 ntBASIC17.4■□□□□ 0.38
HMGN4O00479 AC008556.1-201ENST00000610908 2040 ntBASIC17.4■□□□□ 0.38
HMGN4O00479 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGN4O00479 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGN4O00479 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGN4O00479 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
HMGN4O00479 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGN4O00479 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGN4O00479 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.38
HMGN4O00479 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
HMGN4O00479 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
HMGN4O00479 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
HMGN4O00479 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
HMGN4O00479 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
HMGN4O00479 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.39■□□□□ 0.37
HMGN4O00479 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGN4O00479 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGN4O00479 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HMGN4O00479 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGN4O00479 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
HMGN4O00479 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGN4O00479 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGN4O00479 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGN4O00479 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
HMGN4O00479 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGN4O00479 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.39■□□□□ 0.37
HMGN4O00479 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.39■□□□□ 0.37
HMGN4O00479 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
HMGN4O00479 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGN4O00479 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGN4O00479 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
HMGN4O00479 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.39■□□□□ 0.37
HMGN4O00479 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.39■□□□□ 0.37
HMGN4O00479 RPS2P55-201ENST00000397318 883 ntBASIC17.39■□□□□ 0.37
HMGN4O00479 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.39■□□□□ 0.37
HMGN4O00479 AL158047.1-201ENST00000445918 881 ntBASIC17.39■□□□□ 0.37
HMGN4O00479 UBE2SP1-201ENST00000450587 669 ntBASIC17.39■□□□□ 0.37
HMGN4O00479 AC107956.1-201ENST00000494359 873 ntBASIC17.39■□□□□ 0.37
HMGN4O00479 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.39■□□□□ 0.37
HMGN4O00479 DGCR10-201ENST00000609839 495 ntBASIC17.39■□□□□ 0.37
HMGN4O00479 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
HMGN4O00479 AC018470.1-201ENST00000624790 3129 ntBASIC17.39■□□□□ 0.37
HMGN4O00479 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HMGN4O00479 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGN4O00479 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC17.39■□□□□ 0.37
HMGN4O00479 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.39■□□□□ 0.37
HMGN4O00479 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGN4O00479 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.39■□□□□ 0.37
HMGN4O00479 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGN4O00479 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HMGN4O00479 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HMGN4O00479 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HMGN4O00479 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGN4O00479 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGN4O00479 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HMGN4O00479 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGN4O00479 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGN4O00479 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HMGN4O00479 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.38■□□□□ 0.37
HMGN4O00479 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGN4O00479 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
HMGN4O00479 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGN4O00479 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGN4O00479 ABHD17AP1-201ENST00000358206 933 ntBASIC17.38■□□□□ 0.37
HMGN4O00479 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGN4O00479 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
HMGN4O00479 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGN4O00479 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGN4O00479 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HMGN4O00479 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HMGN4O00479 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HMGN4O00479 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGN4O00479 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGN4O00479 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGN4O00479 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGN4O00479 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGN4O00479 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.38■□□□□ 0.37
HMGN4O00479 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGN4O00479 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGN4O00479 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HMGN4O00479 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGN4O00479 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
HMGN4O00479 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.37■□□□□ 0.37
HMGN4O00479 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGN4O00479 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms