Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
LRRC53A6NM62 CD276-203ENST00000537340 2439 ntTSL 2 BASIC20.16■□□□□ 0.82
LRRC53A6NM62 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LRRC53A6NM62 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LRRC53A6NM62 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
LRRC53A6NM62 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LRRC53A6NM62 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC20.16■□□□□ 0.82
LRRC53A6NM62 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LRRC53A6NM62 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
LRRC53A6NM62 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC20.16■□□□□ 0.82
LRRC53A6NM62 AC026271.3-201ENST00000571884 352 ntBASIC20.16■□□□□ 0.82
LRRC53A6NM62 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LRRC53A6NM62 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.16■□□□□ 0.82
LRRC53A6NM62 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LRRC53A6NM62 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC20.16■□□□□ 0.82
LRRC53A6NM62 KRT8P45-201ENST00000414328 1447 ntBASIC20.16■□□□□ 0.82
LRRC53A6NM62 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LRRC53A6NM62 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.16■□□□□ 0.82
LRRC53A6NM62 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
LRRC53A6NM62 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LRRC53A6NM62 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC20.15■□□□□ 0.82
LRRC53A6NM62 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LRRC53A6NM62 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
LRRC53A6NM62 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LRRC53A6NM62 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC20.15■□□□□ 0.82
LRRC53A6NM62 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
LRRC53A6NM62 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC20.15■□□□□ 0.82
LRRC53A6NM62 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC20.15■□□□□ 0.82
LRRC53A6NM62 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LRRC53A6NM62 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LRRC53A6NM62 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LRRC53A6NM62 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LRRC53A6NM62 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.15■□□□□ 0.82
LRRC53A6NM62 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
LRRC53A6NM62 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
LRRC53A6NM62 AL353807.1-201ENST00000427475 662 ntBASIC20.15■□□□□ 0.82
LRRC53A6NM62 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
LRRC53A6NM62 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.15■□□□□ 0.82
LRRC53A6NM62 AL031985.4-201ENST00000642138 673 ntBASIC20.15■□□□□ 0.82
LRRC53A6NM62 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LRRC53A6NM62 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LRRC53A6NM62 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LRRC53A6NM62 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LRRC53A6NM62 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC20.15■□□□□ 0.82
LRRC53A6NM62 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
LRRC53A6NM62 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.15■□□□□ 0.82
LRRC53A6NM62 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC20.15■□□□□ 0.82
LRRC53A6NM62 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC20.15■□□□□ 0.82
LRRC53A6NM62 AC135776.1-201ENST00000319817 2481 ntBASIC20.15■□□□□ 0.82
LRRC53A6NM62 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC20.15■□□□□ 0.82
LRRC53A6NM62 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LRRC53A6NM62 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LRRC53A6NM62 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC20.14■□□□□ 0.81
LRRC53A6NM62 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LRRC53A6NM62 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC20.14■□□□□ 0.81
LRRC53A6NM62 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LRRC53A6NM62 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC20.14■□□□□ 0.81
LRRC53A6NM62 AC112777.1-201ENST00000540175 1423 ntBASIC20.14■□□□□ 0.81
LRRC53A6NM62 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LRRC53A6NM62 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LRRC53A6NM62 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LRRC53A6NM62 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LRRC53A6NM62 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
LRRC53A6NM62 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
LRRC53A6NM62 AC011506.1-201ENST00000474329 610 ntBASIC20.14■□□□□ 0.81
LRRC53A6NM62 RPPH1-201ENST00000516869 333 ntBASIC20.14■□□□□ 0.81
LRRC53A6NM62 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.14■□□□□ 0.81
LRRC53A6NM62 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.14■□□□□ 0.81
LRRC53A6NM62 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.14■□□□□ 0.81
LRRC53A6NM62 AF186192.3-201ENST00000583427 947 ntBASIC20.14■□□□□ 0.81
LRRC53A6NM62 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.14■□□□□ 0.81
LRRC53A6NM62 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
LRRC53A6NM62 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
LRRC53A6NM62 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
LRRC53A6NM62 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LRRC53A6NM62 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
LRRC53A6NM62 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
LRRC53A6NM62 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
LRRC53A6NM62 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
LRRC53A6NM62 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
LRRC53A6NM62 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
LRRC53A6NM62 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.13■□□□□ 0.81
LRRC53A6NM62 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LRRC53A6NM62 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC20.13■□□□□ 0.81
LRRC53A6NM62 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
LRRC53A6NM62 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LRRC53A6NM62 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
LRRC53A6NM62 CD99P1-205ENST00000527459 561 ntBASIC20.13■□□□□ 0.81
LRRC53A6NM62 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
LRRC53A6NM62 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.13■□□□□ 0.81
LRRC53A6NM62 AC130371.2-201ENST00000619443 611 ntBASIC20.13■□□□□ 0.81
LRRC53A6NM62 MYC-208ENST00000641036 567 ntBASIC20.13■□□□□ 0.81
LRRC53A6NM62 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LRRC53A6NM62 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC20.12■□□□□ 0.81
LRRC53A6NM62 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LRRC53A6NM62 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC20.12■□□□□ 0.81
LRRC53A6NM62 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.12■□□□□ 0.81
LRRC53A6NM62 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
LRRC53A6NM62 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
LRRC53A6NM62 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms