Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
SMC4Q9NTJ3 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC23.98■■□□□ 1.43
SMC4Q9NTJ3 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SMC4Q9NTJ3 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
SMC4Q9NTJ3 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SMC4Q9NTJ3 MIR3180-5-201ENST00000583743 153 ntBASIC23.98■■□□□ 1.43
SMC4Q9NTJ3 FAM87A-204ENST00000613235 858 ntBASIC23.98■■□□□ 1.43
SMC4Q9NTJ3 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC23.98■■□□□ 1.43
SMC4Q9NTJ3 AC010653.2-201ENST00000623505 997 ntBASIC23.98■■□□□ 1.43
SMC4Q9NTJ3 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SMC4Q9NTJ3 LINC01568-207ENST00000641790 1380 ntBASIC23.98■■□□□ 1.43
SMC4Q9NTJ3 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
SMC4Q9NTJ3 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SMC4Q9NTJ3 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC23.98■■□□□ 1.43
SMC4Q9NTJ3 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC23.98■■□□□ 1.43
SMC4Q9NTJ3 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
SMC4Q9NTJ3 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC23.98■■□□□ 1.43
SMC4Q9NTJ3 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
SMC4Q9NTJ3 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC23.98■■□□□ 1.43
SMC4Q9NTJ3 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SMC4Q9NTJ3 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC23.97■■□□□ 1.43
SMC4Q9NTJ3 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
SMC4Q9NTJ3 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
SMC4Q9NTJ3 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC23.97■■□□□ 1.43
SMC4Q9NTJ3 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SMC4Q9NTJ3 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC23.97■■□□□ 1.43
SMC4Q9NTJ3 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SMC4Q9NTJ3 MIR564-202ENST00000385049 94 ntBASIC23.97■■□□□ 1.43
SMC4Q9NTJ3 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC23.97■■□□□ 1.43
SMC4Q9NTJ3 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SMC4Q9NTJ3 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SMC4Q9NTJ3 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
SMC4Q9NTJ3 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
SMC4Q9NTJ3 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
SMC4Q9NTJ3 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC23.97■■□□□ 1.43
SMC4Q9NTJ3 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC23.97■■□□□ 1.43
SMC4Q9NTJ3 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC23.97■■□□□ 1.43
SMC4Q9NTJ3 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC23.97■■□□□ 1.43
SMC4Q9NTJ3 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
SMC4Q9NTJ3 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC23.97■■□□□ 1.43
SMC4Q9NTJ3 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC23.97■■□□□ 1.43
SMC4Q9NTJ3 AC104581.1-202ENST00000635932 2618 ntBASIC23.97■■□□□ 1.43
SMC4Q9NTJ3 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC23.96■■□□□ 1.43
SMC4Q9NTJ3 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC23.96■■□□□ 1.43
SMC4Q9NTJ3 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC23.96■■□□□ 1.43
SMC4Q9NTJ3 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
SMC4Q9NTJ3 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
SMC4Q9NTJ3 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
SMC4Q9NTJ3 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
SMC4Q9NTJ3 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC23.96■■□□□ 1.43
SMC4Q9NTJ3 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC23.96■■□□□ 1.43
SMC4Q9NTJ3 ELP6-205ENST00000439305 880 ntTSL 2 BASIC23.96■■□□□ 1.43
SMC4Q9NTJ3 AC128688.1-201ENST00000487626 519 ntBASIC23.96■■□□□ 1.43
SMC4Q9NTJ3 CR769767.2-201ENST00000622735 460 ntBASIC23.96■■□□□ 1.43
SMC4Q9NTJ3 AC073912.3-201ENST00000624414 853 ntBASIC23.96■■□□□ 1.43
SMC4Q9NTJ3 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
SMC4Q9NTJ3 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC23.96■■□□□ 1.43
SMC4Q9NTJ3 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC23.96■■□□□ 1.43
SMC4Q9NTJ3 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
SMC4Q9NTJ3 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC23.96■■□□□ 1.43
SMC4Q9NTJ3 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC23.96■■□□□ 1.43
SMC4Q9NTJ3 AC126763.1-201ENST00000552015 2118 ntBASIC23.96■■□□□ 1.43
SMC4Q9NTJ3 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
SMC4Q9NTJ3 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC23.96■■□□□ 1.43
SMC4Q9NTJ3 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
SMC4Q9NTJ3 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
SMC4Q9NTJ3 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC23.95■■□□□ 1.43
SMC4Q9NTJ3 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
SMC4Q9NTJ3 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
SMC4Q9NTJ3 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC23.95■■□□□ 1.43
SMC4Q9NTJ3 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.42
SMC4Q9NTJ3 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC23.95■■□□□ 1.42
SMC4Q9NTJ3 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
SMC4Q9NTJ3 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC23.95■■□□□ 1.42
SMC4Q9NTJ3 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC23.95■■□□□ 1.42
SMC4Q9NTJ3 GXYLT1P6-201ENST00000456472 1187 ntBASIC23.95■■□□□ 1.42
SMC4Q9NTJ3 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
SMC4Q9NTJ3 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC23.95■■□□□ 1.42
SMC4Q9NTJ3 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC23.95■■□□□ 1.42
SMC4Q9NTJ3 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC23.95■■□□□ 1.42
SMC4Q9NTJ3 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC23.95■■□□□ 1.42
SMC4Q9NTJ3 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC23.95■■□□□ 1.42
SMC4Q9NTJ3 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.42
SMC4Q9NTJ3 AC005082.1-201ENST00000413042 2259 ntBASIC23.95■■□□□ 1.42
SMC4Q9NTJ3 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC23.95■■□□□ 1.42
SMC4Q9NTJ3 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC23.95■■□□□ 1.42
SMC4Q9NTJ3 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SMC4Q9NTJ3 KRT8P45-201ENST00000414328 1447 ntBASIC23.94■■□□□ 1.42
SMC4Q9NTJ3 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC23.94■■□□□ 1.42
SMC4Q9NTJ3 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC23.94■■□□□ 1.42
SMC4Q9NTJ3 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SMC4Q9NTJ3 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SMC4Q9NTJ3 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
SMC4Q9NTJ3 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SMC4Q9NTJ3 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SMC4Q9NTJ3 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SMC4Q9NTJ3 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC23.94■■□□□ 1.42
SMC4Q9NTJ3 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SMC4Q9NTJ3 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
SMC4Q9NTJ3 RPS20-210ENST00000523936 899 ntTSL 2 BASIC23.94■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms