Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TREX1Q9NSU2 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
TREX1Q9NSU2 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TREX1Q9NSU2 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.67■□□□□ 0.58
TREX1Q9NSU2 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
TREX1Q9NSU2 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TREX1Q9NSU2 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TREX1Q9NSU2 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.67■□□□□ 0.58
TREX1Q9NSU2 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
TREX1Q9NSU2 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.67■□□□□ 0.58
TREX1Q9NSU2 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TREX1Q9NSU2 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.67■□□□□ 0.58
TREX1Q9NSU2 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.67■□□□□ 0.58
TREX1Q9NSU2 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.67■□□□□ 0.58
TREX1Q9NSU2 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.67■□□□□ 0.58
TREX1Q9NSU2 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.67■□□□□ 0.58
TREX1Q9NSU2 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.67■□□□□ 0.58
TREX1Q9NSU2 AP006294.2-201ENST00000641667 209 ntBASIC18.67■□□□□ 0.58
TREX1Q9NSU2 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TREX1Q9NSU2 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TREX1Q9NSU2 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
TREX1Q9NSU2 AL390961.4-201ENST00000623958 2535 ntBASIC18.67■□□□□ 0.58
TREX1Q9NSU2 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TREX1Q9NSU2 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
TREX1Q9NSU2 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
TREX1Q9NSU2 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
TREX1Q9NSU2 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TREX1Q9NSU2 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 SNORA78-201ENST00000459373 127 ntBASIC18.66■□□□□ 0.58
TREX1Q9NSU2 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 FITM1-202ENST00000559294 800 ntBASIC18.66■□□□□ 0.58
TREX1Q9NSU2 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 AP000525.1-201ENST00000608286 694 ntBASIC18.66■□□□□ 0.58
TREX1Q9NSU2 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.66■□□□□ 0.58
TREX1Q9NSU2 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 MYLKP1-201ENST00000509077 1580 ntBASIC18.65■□□□□ 0.58
TREX1Q9NSU2 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.65■□□□□ 0.58
TREX1Q9NSU2 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TREX1Q9NSU2 AL162741.1-201ENST00000565563 1558 ntBASIC18.64■□□□□ 0.58
TREX1Q9NSU2 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.64■□□□□ 0.58
TREX1Q9NSU2 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms