Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
BRF2Q9HAW0 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
BRF2Q9HAW0 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
BRF2Q9HAW0 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.91■□□□□ 0.46
BRF2Q9HAW0 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
BRF2Q9HAW0 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.91■□□□□ 0.46
BRF2Q9HAW0 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
BRF2Q9HAW0 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.91■□□□□ 0.46
BRF2Q9HAW0 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 AP005242.2-201ENST00000580065 1175 ntBASIC17.9■□□□□ 0.46
BRF2Q9HAW0 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 AL162741.1-201ENST00000565563 1558 ntBASIC17.9■□□□□ 0.46
BRF2Q9HAW0 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
BRF2Q9HAW0 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
BRF2Q9HAW0 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.46
BRF2Q9HAW0 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
BRF2Q9HAW0 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
BRF2Q9HAW0 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
BRF2Q9HAW0 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.45
BRF2Q9HAW0 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
BRF2Q9HAW0 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
BRF2Q9HAW0 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
BRF2Q9HAW0 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.89■□□□□ 0.45
BRF2Q9HAW0 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.89■□□□□ 0.45
BRF2Q9HAW0 AL023284.2-201ENST00000405850 579 ntBASIC17.89■□□□□ 0.45
BRF2Q9HAW0 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.89■□□□□ 0.45
BRF2Q9HAW0 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC17.89■□□□□ 0.45
BRF2Q9HAW0 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.89■□□□□ 0.45
BRF2Q9HAW0 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.89■□□□□ 0.45
BRF2Q9HAW0 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
BRF2Q9HAW0 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
BRF2Q9HAW0 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.89■□□□□ 0.45
BRF2Q9HAW0 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.89■□□□□ 0.45
BRF2Q9HAW0 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.89■□□□□ 0.45
BRF2Q9HAW0 AC008556.1-201ENST00000610908 2040 ntBASIC17.89■□□□□ 0.45
BRF2Q9HAW0 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
BRF2Q9HAW0 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
BRF2Q9HAW0 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.89■□□□□ 0.45
BRF2Q9HAW0 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
BRF2Q9HAW0 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
BRF2Q9HAW0 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
BRF2Q9HAW0 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.88■□□□□ 0.45
BRF2Q9HAW0 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.88■□□□□ 0.45
BRF2Q9HAW0 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BRF2Q9HAW0 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BRF2Q9HAW0 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BRF2Q9HAW0 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.88■□□□□ 0.45
BRF2Q9HAW0 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
BRF2Q9HAW0 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BRF2Q9HAW0 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
BRF2Q9HAW0 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC17.88■□□□□ 0.45
BRF2Q9HAW0 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.88■□□□□ 0.45
BRF2Q9HAW0 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BRF2Q9HAW0 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
BRF2Q9HAW0 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BRF2Q9HAW0 MCCD1P1-208ENST00000445732 328 ntBASIC17.88■□□□□ 0.45
BRF2Q9HAW0 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.88■□□□□ 0.45
BRF2Q9HAW0 AC008550.1-201ENST00000511500 884 ntBASIC17.88■□□□□ 0.45
BRF2Q9HAW0 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.88■□□□□ 0.45
BRF2Q9HAW0 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
BRF2Q9HAW0 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
BRF2Q9HAW0 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
BRF2Q9HAW0 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.88■□□□□ 0.45
BRF2Q9HAW0 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BRF2Q9HAW0 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.88■□□□□ 0.45
BRF2Q9HAW0 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
BRF2Q9HAW0 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.87■□□□□ 0.45
BRF2Q9HAW0 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
BRF2Q9HAW0 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
BRF2Q9HAW0 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
BRF2Q9HAW0 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
BRF2Q9HAW0 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
BRF2Q9HAW0 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.87■□□□□ 0.45
BRF2Q9HAW0 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
BRF2Q9HAW0 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC17.87■□□□□ 0.45
BRF2Q9HAW0 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms