Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 MRPL3P1-201ENST00000400109 1033 ntBASIC23.76■■□□□ 1.39
USP42Q9H9J4 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
USP42Q9H9J4 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP42Q9H9J4 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC23.76■■□□□ 1.39
USP42Q9H9J4 LINC01711-201ENST00000598340 967 ntBASIC23.76■■□□□ 1.39
USP42Q9H9J4 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC23.76■■□□□ 1.39
USP42Q9H9J4 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC23.76■■□□□ 1.39
USP42Q9H9J4 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP42Q9H9J4 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC23.76■■□□□ 1.39
USP42Q9H9J4 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP42Q9H9J4 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP42Q9H9J4 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC23.76■■□□□ 1.39
USP42Q9H9J4 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP42Q9H9J4 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
USP42Q9H9J4 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
USP42Q9H9J4 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
USP42Q9H9J4 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
USP42Q9H9J4 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC23.75■■□□□ 1.39
USP42Q9H9J4 AC005332.7-201ENST00000614046 2005 ntBASIC23.75■■□□□ 1.39
USP42Q9H9J4 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
USP42Q9H9J4 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
USP42Q9H9J4 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
USP42Q9H9J4 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
USP42Q9H9J4 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC23.75■■□□□ 1.39
USP42Q9H9J4 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
USP42Q9H9J4 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
USP42Q9H9J4 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC23.75■■□□□ 1.39
USP42Q9H9J4 AC104819.1-201ENST00000504587 486 ntBASIC23.75■■□□□ 1.39
USP42Q9H9J4 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC23.75■■□□□ 1.39
USP42Q9H9J4 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC23.75■■□□□ 1.39
USP42Q9H9J4 AL390719.2-201ENST00000606993 987 ntBASIC23.75■■□□□ 1.39
USP42Q9H9J4 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
USP42Q9H9J4 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC23.75■■□□□ 1.39
USP42Q9H9J4 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
USP42Q9H9J4 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
USP42Q9H9J4 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC23.75■■□□□ 1.39
USP42Q9H9J4 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
USP42Q9H9J4 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
USP42Q9H9J4 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
USP42Q9H9J4 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC23.74■■□□□ 1.39
USP42Q9H9J4 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
USP42Q9H9J4 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC23.74■■□□□ 1.39
USP42Q9H9J4 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC23.74■■□□□ 1.39
USP42Q9H9J4 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
USP42Q9H9J4 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC23.74■■□□□ 1.39
USP42Q9H9J4 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC23.74■■□□□ 1.39
USP42Q9H9J4 KRT16P4-201ENST00000453883 522 ntBASIC23.74■■□□□ 1.39
USP42Q9H9J4 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC23.74■■□□□ 1.39
USP42Q9H9J4 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
USP42Q9H9J4 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC23.74■■□□□ 1.39
USP42Q9H9J4 CALM3-211ENST00000598871 561 ntTSL 4 BASIC23.74■■□□□ 1.39
USP42Q9H9J4 AL121912.1-201ENST00000603683 238 ntBASIC23.74■■□□□ 1.39
USP42Q9H9J4 AC138894.3-201ENST00000603787 634 ntBASIC23.74■■□□□ 1.39
USP42Q9H9J4 AC010240.3-201ENST00000607688 395 ntBASIC23.74■■□□□ 1.39
USP42Q9H9J4 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
USP42Q9H9J4 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
USP42Q9H9J4 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
USP42Q9H9J4 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
USP42Q9H9J4 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
USP42Q9H9J4 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC23.74■■□□□ 1.39
USP42Q9H9J4 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
USP42Q9H9J4 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
USP42Q9H9J4 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC23.73■■□□□ 1.39
USP42Q9H9J4 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
USP42Q9H9J4 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
USP42Q9H9J4 AL662844.1-201ENST00000546340 181 ntBASIC23.73■■□□□ 1.39
USP42Q9H9J4 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC23.73■■□□□ 1.39
USP42Q9H9J4 AC074051.2-201ENST00000565115 352 ntBASIC23.73■■□□□ 1.39
USP42Q9H9J4 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
USP42Q9H9J4 AC090616.6-201ENST00000582640 721 ntBASIC23.73■■□□□ 1.39
USP42Q9H9J4 AC005332.3-201ENST00000589904 676 ntBASIC23.73■■□□□ 1.39
USP42Q9H9J4 TK1-205ENST00000590862 642 ntTSL 3 BASIC23.73■■□□□ 1.39
USP42Q9H9J4 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
USP42Q9H9J4 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC23.73■■□□□ 1.39
USP42Q9H9J4 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC23.73■■□□□ 1.39
USP42Q9H9J4 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC23.73■■□□□ 1.39
USP42Q9H9J4 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
USP42Q9H9J4 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC23.73■■□□□ 1.39
USP42Q9H9J4 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP42Q9H9J4 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP42Q9H9J4 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
USP42Q9H9J4 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP42Q9H9J4 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP42Q9H9J4 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP42Q9H9J4 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP42Q9H9J4 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
USP42Q9H9J4 TSPY12P-201ENST00000421279 868 ntBASIC23.72■■□□□ 1.39
USP42Q9H9J4 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC23.72■■□□□ 1.39
USP42Q9H9J4 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC23.72■■□□□ 1.39
USP42Q9H9J4 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC23.72■■□□□ 1.39
USP42Q9H9J4 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC23.72■■□□□ 1.39
USP42Q9H9J4 AC104390.1-201ENST00000555663 520 ntBASIC23.72■■□□□ 1.39
USP42Q9H9J4 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC23.72■■□□□ 1.39
USP42Q9H9J4 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP42Q9H9J4 AL109659.2-201ENST00000606809 1674 ntBASIC23.72■■□□□ 1.39
USP42Q9H9J4 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP42Q9H9J4 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
USP42Q9H9J4 KRT8P7-201ENST00000533003 1432 ntBASIC23.71■■□□□ 1.39
USP42Q9H9J4 HOXB1-202ENST00000577092 1414 ntBASIC23.71■■□□□ 1.39
USP42Q9H9J4 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms