Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
COL12A1Q99715 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL12A1Q99715 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL12A1Q99715 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.33■□□□□ 0.21
COL12A1Q99715 HLA-V-201ENST00000429037 534 ntBASIC16.33■□□□□ 0.21
COL12A1Q99715 AC007967.2-201ENST00000432613 625 ntBASIC16.33■□□□□ 0.21
COL12A1Q99715 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC16.33■□□□□ 0.21
COL12A1Q99715 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.33■□□□□ 0.21
COL12A1Q99715 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.33■□□□□ 0.21
COL12A1Q99715 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.33■□□□□ 0.21
COL12A1Q99715 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.33■□□□□ 0.21
COL12A1Q99715 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL12A1Q99715 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
COL12A1Q99715 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
COL12A1Q99715 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL12A1Q99715 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC16.33■□□□□ 0.2
COL12A1Q99715 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL12A1Q99715 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
COL12A1Q99715 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL12A1Q99715 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL12A1Q99715 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL12A1Q99715 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL12A1Q99715 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC16.33■□□□□ 0.2
COL12A1Q99715 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
COL12A1Q99715 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
COL12A1Q99715 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL12A1Q99715 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL12A1Q99715 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
COL12A1Q99715 RPS2P1-201ENST00000434010 821 ntBASIC16.32■□□□□ 0.2
COL12A1Q99715 FGFR3P6-201ENST00000457012 610 ntBASIC16.32■□□□□ 0.2
COL12A1Q99715 CFL1-202ENST00000524553 860 ntTSL 2 BASIC16.32■□□□□ 0.2
COL12A1Q99715 ME2-216ENST00000639850 2331 ntTSL 5 BASIC16.32■□□□□ 0.2
COL12A1Q99715 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL12A1Q99715 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL12A1Q99715 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC16.32■□□□□ 0.2
COL12A1Q99715 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL12A1Q99715 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
COL12A1Q99715 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
COL12A1Q99715 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL12A1Q99715 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL12A1Q99715 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL12A1Q99715 AC011467.4-201ENST00000594891 528 ntBASIC16.32■□□□□ 0.2
COL12A1Q99715 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC16.32■□□□□ 0.2
COL12A1Q99715 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL12A1Q99715 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC16.32■□□□□ 0.2
COL12A1Q99715 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL12A1Q99715 ANKRD18DP-204ENST00000455355 1975 ntBASIC16.32■□□□□ 0.2
COL12A1Q99715 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL12A1Q99715 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC16.32■□□□□ 0.2
COL12A1Q99715 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
COL12A1Q99715 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC16.32■□□□□ 0.2
COL12A1Q99715 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.32■□□□□ 0.2
COL12A1Q99715 AP002472.1-201ENST00000577490 586 ntBASIC16.32■□□□□ 0.2
COL12A1Q99715 MIR3180-5-201ENST00000583743 153 ntBASIC16.32■□□□□ 0.2
COL12A1Q99715 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL12A1Q99715 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL12A1Q99715 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL12A1Q99715 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL12A1Q99715 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
COL12A1Q99715 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL12A1Q99715 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.31■□□□□ 0.2
COL12A1Q99715 NUS1P2-201ENST00000417358 873 ntBASIC16.31■□□□□ 0.2
COL12A1Q99715 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC16.31■□□□□ 0.2
COL12A1Q99715 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC16.31■□□□□ 0.2
COL12A1Q99715 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL12A1Q99715 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL12A1Q99715 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL12A1Q99715 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL12A1Q99715 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL12A1Q99715 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL12A1Q99715 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL12A1Q99715 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC16.31■□□□□ 0.2
COL12A1Q99715 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.31■□□□□ 0.2
COL12A1Q99715 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL12A1Q99715 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
COL12A1Q99715 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
COL12A1Q99715 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL12A1Q99715 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL12A1Q99715 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
COL12A1Q99715 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC16.31■□□□□ 0.2
COL12A1Q99715 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL12A1Q99715 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC16.3■□□□□ 0.2
COL12A1Q99715 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL12A1Q99715 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL12A1Q99715 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL12A1Q99715 IGHGP-201ENST00000390555 1178 ntBASIC16.3■□□□□ 0.2
COL12A1Q99715 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC16.3■□□□□ 0.2
COL12A1Q99715 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL12A1Q99715 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC16.3■□□□□ 0.2
COL12A1Q99715 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.3■□□□□ 0.2
COL12A1Q99715 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC16.3■□□□□ 0.2
COL12A1Q99715 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL12A1Q99715 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC16.3■□□□□ 0.2
COL12A1Q99715 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
COL12A1Q99715 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC16.3■□□□□ 0.2
COL12A1Q99715 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC16.3■□□□□ 0.2
COL12A1Q99715 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC16.3■□□□□ 0.2
COL12A1Q99715 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.3■□□□□ 0.2
COL12A1Q99715 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC16.3■□□□□ 0.2
COL12A1Q99715 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms