Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD3Q3KNS1 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
PTCHD3Q3KNS1 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
PTCHD3Q3KNS1 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD3Q3KNS1 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.29■□□□□ 0.52
PTCHD3Q3KNS1 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD3Q3KNS1 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD3Q3KNS1 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
PTCHD3Q3KNS1 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC18.29■□□□□ 0.52
PTCHD3Q3KNS1 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.29■□□□□ 0.52
PTCHD3Q3KNS1 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD3Q3KNS1 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.29■□□□□ 0.52
PTCHD3Q3KNS1 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
PTCHD3Q3KNS1 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.29■□□□□ 0.52
PTCHD3Q3KNS1 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
PTCHD3Q3KNS1 AC092865.7-201ENST00000641832 219 ntBASIC18.29■□□□□ 0.52
PTCHD3Q3KNS1 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD3Q3KNS1 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.29■□□□□ 0.52
PTCHD3Q3KNS1 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD3Q3KNS1 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD3Q3KNS1 ANO7L1-203ENST00000602586 1720 ntBASIC18.29■□□□□ 0.52
PTCHD3Q3KNS1 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.29■□□□□ 0.52
PTCHD3Q3KNS1 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD3Q3KNS1 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD3Q3KNS1 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 TERF1P1-201ENST00000311003 1181 ntBASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 AL137013.1-201ENST00000432946 1228 ntBASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 ECEL1P2-202ENST00000465689 757 ntBASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 AC068587.9-201ENST00000641814 219 ntBASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD3Q3KNS1 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTCHD3Q3KNS1 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.27■□□□□ 0.52
PTCHD3Q3KNS1 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.27■□□□□ 0.52
PTCHD3Q3KNS1 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PTCHD3Q3KNS1 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.27■□□□□ 0.52
PTCHD3Q3KNS1 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTCHD3Q3KNS1 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTCHD3Q3KNS1 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PTCHD3Q3KNS1 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTCHD3Q3KNS1 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
PTCHD3Q3KNS1 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.27■□□□□ 0.52
PTCHD3Q3KNS1 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.27■□□□□ 0.52
PTCHD3Q3KNS1 WIZP1-201ENST00000531444 2299 ntBASIC18.27■□□□□ 0.52
PTCHD3Q3KNS1 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTCHD3Q3KNS1 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTCHD3Q3KNS1 INGX-201ENST00000359239 846 ntBASIC18.27■□□□□ 0.52
PTCHD3Q3KNS1 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.27■□□□□ 0.52
PTCHD3Q3KNS1 EGLN1P1-201ENST00000531623 762 ntBASIC18.27■□□□□ 0.52
PTCHD3Q3KNS1 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PTCHD3Q3KNS1 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PTCHD3Q3KNS1 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.27■□□□□ 0.52
PTCHD3Q3KNS1 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PTCHD3Q3KNS1 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTCHD3Q3KNS1 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
PTCHD3Q3KNS1 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
PTCHD3Q3KNS1 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
PTCHD3Q3KNS1 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.27■□□□□ 0.51
PTCHD3Q3KNS1 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
PTCHD3Q3KNS1 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
PTCHD3Q3KNS1 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.27■□□□□ 0.51
PTCHD3Q3KNS1 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
PTCHD3Q3KNS1 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
PTCHD3Q3KNS1 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
PTCHD3Q3KNS1 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
PTCHD3Q3KNS1 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTCHD3Q3KNS1 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.26■□□□□ 0.51
PTCHD3Q3KNS1 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.26■□□□□ 0.51
PTCHD3Q3KNS1 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
PTCHD3Q3KNS1 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTCHD3Q3KNS1 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTCHD3Q3KNS1 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.26■□□□□ 0.51
PTCHD3Q3KNS1 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTCHD3Q3KNS1 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTCHD3Q3KNS1 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTCHD3Q3KNS1 TSPY14P-201ENST00000303979 915 ntBASIC18.26■□□□□ 0.51
PTCHD3Q3KNS1 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC18.26■□□□□ 0.51
PTCHD3Q3KNS1 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.26■□□□□ 0.51
PTCHD3Q3KNS1 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms