Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
EPHB3P54753 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
EPHB3P54753 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
EPHB3P54753 AC016734.2-201ENST00000624325 1377 ntBASIC19.55■□□□□ 0.72
EPHB3P54753 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.55■□□□□ 0.72
EPHB3P54753 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
EPHB3P54753 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
EPHB3P54753 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
EPHB3P54753 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
EPHB3P54753 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
EPHB3P54753 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
EPHB3P54753 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC19.54■□□□□ 0.72
EPHB3P54753 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
EPHB3P54753 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
EPHB3P54753 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
EPHB3P54753 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
EPHB3P54753 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC19.54■□□□□ 0.72
EPHB3P54753 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC19.54■□□□□ 0.72
EPHB3P54753 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
EPHB3P54753 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC19.54■□□□□ 0.72
EPHB3P54753 KRT8P26-201ENST00000534154 1276 ntBASIC19.54■□□□□ 0.72
EPHB3P54753 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.54■□□□□ 0.72
EPHB3P54753 MIR3180-4-201ENST00000582223 153 ntBASIC19.54■□□□□ 0.72
EPHB3P54753 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.54■□□□□ 0.72
EPHB3P54753 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC19.54■□□□□ 0.72
EPHB3P54753 AC068587.9-201ENST00000641814 219 ntBASIC19.54■□□□□ 0.72
EPHB3P54753 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.54■□□□□ 0.72
EPHB3P54753 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
EPHB3P54753 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
EPHB3P54753 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
EPHB3P54753 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
EPHB3P54753 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
EPHB3P54753 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.54■□□□□ 0.72
EPHB3P54753 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
EPHB3P54753 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
EPHB3P54753 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
EPHB3P54753 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
EPHB3P54753 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19.53■□□□□ 0.72
EPHB3P54753 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.53■□□□□ 0.72
EPHB3P54753 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.53■□□□□ 0.72
EPHB3P54753 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
EPHB3P54753 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.53■□□□□ 0.72
EPHB3P54753 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.53■□□□□ 0.72
EPHB3P54753 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
EPHB3P54753 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
EPHB3P54753 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
EPHB3P54753 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
EPHB3P54753 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
EPHB3P54753 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
EPHB3P54753 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC19.53■□□□□ 0.72
EPHB3P54753 PP7080-204ENST00000510714 601 ntTSL 3 BASIC19.53■□□□□ 0.72
EPHB3P54753 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC19.53■□□□□ 0.72
EPHB3P54753 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.53■□□□□ 0.72
EPHB3P54753 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.53■□□□□ 0.72
EPHB3P54753 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
EPHB3P54753 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.53■□□□□ 0.72
EPHB3P54753 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
EPHB3P54753 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
EPHB3P54753 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
EPHB3P54753 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
EPHB3P54753 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
EPHB3P54753 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.53■□□□□ 0.72
EPHB3P54753 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
EPHB3P54753 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
EPHB3P54753 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
EPHB3P54753 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
EPHB3P54753 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.52■□□□□ 0.72
EPHB3P54753 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.52■□□□□ 0.72
EPHB3P54753 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
EPHB3P54753 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
EPHB3P54753 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
EPHB3P54753 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
EPHB3P54753 TSPY22P-201ENST00000427496 604 ntBASIC19.52■□□□□ 0.72
EPHB3P54753 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.52■□□□□ 0.72
EPHB3P54753 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
EPHB3P54753 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.52■□□□□ 0.72
EPHB3P54753 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC19.52■□□□□ 0.72
EPHB3P54753 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.52■□□□□ 0.72
EPHB3P54753 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
EPHB3P54753 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
EPHB3P54753 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
EPHB3P54753 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
EPHB3P54753 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
EPHB3P54753 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
EPHB3P54753 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
EPHB3P54753 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
EPHB3P54753 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
EPHB3P54753 AFG3L1P-217ENST00000557444 2447 ntBASIC19.51■□□□□ 0.71
EPHB3P54753 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
EPHB3P54753 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
EPHB3P54753 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
EPHB3P54753 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
EPHB3P54753 PVRIG2P-201ENST00000435460 978 ntBASIC19.51■□□□□ 0.71
EPHB3P54753 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
EPHB3P54753 MIR3652-201ENST00000579335 131 ntBASIC19.51■□□□□ 0.71
EPHB3P54753 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
EPHB3P54753 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
EPHB3P54753 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC19.51■□□□□ 0.71
EPHB3P54753 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
EPHB3P54753 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms