Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.12■□□□□ 0.33
RFC3P40938 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFC3P40938 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFC3P40938 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RFC3P40938 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.12■□□□□ 0.33
RFC3P40938 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.12■□□□□ 0.33
RFC3P40938 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RFC3P40938 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFC3P40938 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.12■□□□□ 0.33
RFC3P40938 PCED1CP-201ENST00000419887 785 ntBASIC17.12■□□□□ 0.33
RFC3P40938 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
RFC3P40938 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.12■□□□□ 0.33
RFC3P40938 NEK4P2-201ENST00000580004 1012 ntBASIC17.12■□□□□ 0.33
RFC3P40938 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.12■□□□□ 0.33
RFC3P40938 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.12■□□□□ 0.33
RFC3P40938 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.12■□□□□ 0.33
RFC3P40938 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFC3P40938 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.12■□□□□ 0.33
RFC3P40938 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC17.12■□□□□ 0.33
RFC3P40938 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFC3P40938 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFC3P40938 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RFC3P40938 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RFC3P40938 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
RFC3P40938 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFC3P40938 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
RFC3P40938 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFC3P40938 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFC3P40938 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.11■□□□□ 0.33
RFC3P40938 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.11■□□□□ 0.33
RFC3P40938 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
RFC3P40938 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFC3P40938 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RFC3P40938 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFC3P40938 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFC3P40938 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.11■□□□□ 0.33
RFC3P40938 FAM86EP-206ENST00000510506 987 ntBASIC17.11■□□□□ 0.33
RFC3P40938 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.11■□□□□ 0.33
RFC3P40938 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
RFC3P40938 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.11■□□□□ 0.33
RFC3P40938 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.11■□□□□ 0.33
RFC3P40938 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RFC3P40938 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.11■□□□□ 0.33
RFC3P40938 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFC3P40938 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.11■□□□□ 0.33
RFC3P40938 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC17.11■□□□□ 0.33
RFC3P40938 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.11■□□□□ 0.33
RFC3P40938 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFC3P40938 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.11■□□□□ 0.33
RFC3P40938 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFC3P40938 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFC3P40938 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.11■□□□□ 0.33
RFC3P40938 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.11■□□□□ 0.33
RFC3P40938 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RFC3P40938 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFC3P40938 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFC3P40938 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.11■□□□□ 0.33
RFC3P40938 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
RFC3P40938 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
RFC3P40938 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.11■□□□□ 0.33
RFC3P40938 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RFC3P40938 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
RFC3P40938 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.1■□□□□ 0.33
RFC3P40938 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC17.1■□□□□ 0.33
RFC3P40938 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC17.1■□□□□ 0.33
RFC3P40938 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFC3P40938 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RFC3P40938 IRX1P1-201ENST00000438849 1838 ntBASIC17.1■□□□□ 0.33
RFC3P40938 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFC3P40938 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFC3P40938 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
RFC3P40938 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
RFC3P40938 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFC3P40938 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFC3P40938 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFC3P40938 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RFC3P40938 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
RFC3P40938 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
RFC3P40938 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.1■□□□□ 0.33
RFC3P40938 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFC3P40938 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.1■□□□□ 0.33
RFC3P40938 AC093458.2-201ENST00000623150 629 ntBASIC17.1■□□□□ 0.33
RFC3P40938 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.1■□□□□ 0.33
RFC3P40938 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFC3P40938 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.1■□□□□ 0.33
RFC3P40938 KRT8P3-201ENST00000519669 1449 ntBASIC17.1■□□□□ 0.33
RFC3P40938 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RFC3P40938 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
RFC3P40938 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RFC3P40938 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RFC3P40938 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
RFC3P40938 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RFC3P40938 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC17.1■□□□□ 0.33
RFC3P40938 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFC3P40938 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFC3P40938 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFC3P40938 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC17.09■□□□□ 0.33
RFC3P40938 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
RFC3P40938 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RFC3P40938 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms