Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RORAP35398 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RORAP35398 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC17.77■□□□□ 0.44
RORAP35398 ZNF444P1-201ENST00000559497 298 ntBASIC17.77■□□□□ 0.44
RORAP35398 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.77■□□□□ 0.44
RORAP35398 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.77■□□□□ 0.44
RORAP35398 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
RORAP35398 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.77■□□□□ 0.44
RORAP35398 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RORAP35398 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RORAP35398 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
RORAP35398 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
RORAP35398 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC17.77■□□□□ 0.44
RORAP35398 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
RORAP35398 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
RORAP35398 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RORAP35398 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
RORAP35398 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
RORAP35398 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
RORAP35398 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
RORAP35398 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
RORAP35398 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
RORAP35398 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC17.77■□□□□ 0.43
RORAP35398 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC17.77■□□□□ 0.43
RORAP35398 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.77■□□□□ 0.43
RORAP35398 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RORAP35398 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
RORAP35398 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.76■□□□□ 0.43
RORAP35398 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
RORAP35398 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.76■□□□□ 0.43
RORAP35398 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RORAP35398 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.76■□□□□ 0.43
RORAP35398 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.76■□□□□ 0.43
RORAP35398 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC17.76■□□□□ 0.43
RORAP35398 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.76■□□□□ 0.43
RORAP35398 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RORAP35398 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RORAP35398 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RORAP35398 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RORAP35398 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.76■□□□□ 0.43
RORAP35398 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.76■□□□□ 0.43
RORAP35398 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.76■□□□□ 0.43
RORAP35398 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.76■□□□□ 0.43
RORAP35398 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC17.76■□□□□ 0.43
RORAP35398 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RORAP35398 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC17.76■□□□□ 0.43
RORAP35398 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RORAP35398 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RORAP35398 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
RORAP35398 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.76■□□□□ 0.43
RORAP35398 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RORAP35398 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RORAP35398 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RORAP35398 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
RORAP35398 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RORAP35398 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
RORAP35398 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
RORAP35398 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RORAP35398 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.76■□□□□ 0.43
RORAP35398 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
RORAP35398 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
RORAP35398 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RORAP35398 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RORAP35398 LINC01311-201ENST00000565162 1445 ntBASIC17.75■□□□□ 0.43
RORAP35398 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RORAP35398 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RORAP35398 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RORAP35398 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RORAP35398 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RORAP35398 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.75■□□□□ 0.43
RORAP35398 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RORAP35398 RASA4DP-201ENST00000460726 1199 ntBASIC17.75■□□□□ 0.43
RORAP35398 VENTXP5-201ENST00000523979 775 ntBASIC17.75■□□□□ 0.43
RORAP35398 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
RORAP35398 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
RORAP35398 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.75■□□□□ 0.43
RORAP35398 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RORAP35398 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
RORAP35398 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RORAP35398 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.75■□□□□ 0.43
RORAP35398 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RORAP35398 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.75■□□□□ 0.43
RORAP35398 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RORAP35398 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.75■□□□□ 0.43
RORAP35398 FP475955.4-201ENST00000623131 1990 ntBASIC17.75■□□□□ 0.43
RORAP35398 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RORAP35398 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
RORAP35398 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
RORAP35398 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RORAP35398 IRX1P1-201ENST00000438849 1838 ntBASIC17.75■□□□□ 0.43
RORAP35398 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
RORAP35398 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.74■□□□□ 0.43
RORAP35398 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RORAP35398 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.74■□□□□ 0.43
RORAP35398 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RORAP35398 AL109659.2-201ENST00000606809 1674 ntBASIC17.74■□□□□ 0.43
RORAP35398 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
RORAP35398 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RORAP35398 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.74■□□□□ 0.43
RORAP35398 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms