Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 NCAPG2-205ENST00000441982 2926 ntTSL 29.3□□□□□ -0.926e-7■■□□□ 13.7
YBX3P16989 NCAPG2-206ENST00000467785 3276 ntTSL 1 (best)8.9□□□□□ -0.996e-7■■□□□ 13.7
YBX3P16989 NCAPG2-204ENST00000432615 4134 ntTSL 58.41□□□□□ -1.066e-7■■□□□ 13.7
YBX3P16989 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC7.46□□□□□ -1.226e-7■■□□□ 13.7
YBX3P16989 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.817e-7■■□□□ 13.7
YBX3P16989 PIH1D1-224ENST00000602226 341 ntTSL 322.66■■□□□ 1.224e-11■■□□□ 13.7
YBX3P16989 PIH1D1-204ENST00000594845 489 ntTSL 522.66■■□□□ 1.224e-11■■□□□ 13.7
YBX3P16989 PIH1D1-202ENST00000593629 1084 ntTSL 322.66■■□□□ 1.224e-11■■□□□ 13.7
YBX3P16989 PIH1D1-214ENST00000597577 698 ntTSL 522.66■■□□□ 1.224e-11■■□□□ 13.7
YBX3P16989 PIH1D1-223ENST00000602076 474 ntTSL 222.66■■□□□ 1.224e-11■■□□□ 13.7
YBX3P16989 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC22.48■■□□□ 1.194e-10■■□□□ 13.7
YBX3P16989 PIH1D1-215ENST00000598175 418 ntTSL 521.53■■□□□ 1.044e-11■■□□□ 13.7
YBX3P16989 PIH1D1-208ENST00000595633 424 ntTSL 220.19■□□□□ 0.824e-11■■□□□ 13.7
YBX3P16989 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.295e-7■■□□□ 13.7
YBX3P16989 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.15■□□□□ 0.345e-7■■□□□ 13.7
YBX3P16989 KDELR2-202ENST00000382267 583 ntTSL 412.53□□□□□ -0.42e-10■■□□□ 13.7
YBX3P16989 UTRN-209ENST00000455022 633 ntTSL 37.63□□□□□ -1.193e-7■■□□□ 13.7
YBX3P16989 DANCR-204ENST00000444958 709 ntTSL 3 BASIC22.52■■□□□ 1.22e-6■■□□□ 13.7
YBX3P16989 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC21.11■□□□□ 0.972e-6■■□□□ 13.7
YBX3P16989 DANCR-202ENST00000425653 823 ntTSL 1 (best)21.11■□□□□ 0.972e-6■■□□□ 13.7
YBX3P16989 EVL-223ENST00000557384 883 ntTSL 521.13■□□□□ 0.972e-6■■□□□ 13.7
YBX3P16989 MYO9B-204ENST00000594824 7595 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.198e-7■■□□□ 13.7
YBX3P16989 MYO9B-207ENST00000595641 6215 ntTSL 513.44□□□□□ -0.268e-7■■□□□ 13.7
YBX3P16989 MYO9B-206ENST00000595618 7623 ntTSL 1 (best) BASIC12.91□□□□□ -0.348e-7■■□□□ 13.7
YBX3P16989 MYO9B-201ENST00000397274 7532 ntTSL 5 BASIC12.83□□□□□ -0.368e-7■■□□□ 13.7
YBX3P16989 NT5DC2-204ENST00000462261 1619 ntTSL 218.91■□□□□ 0.622e-6■■□□□ 13.7
YBX3P16989 NT5DC2-205ENST00000463947 670 ntTSL 318.25■□□□□ 0.512e-6■■□□□ 13.7
YBX3P16989 NT5DC2-210ENST00000479024 1714 ntTSL 217.11■□□□□ 0.332e-6■■□□□ 13.7
YBX3P16989 PRPF8-207ENST00000573681 1044 ntTSL 214.73□□□□□ -0.051e-6■■□□□ 13.7
YBX3P16989 PRPF8-209ENST00000573725 749 ntTSL 58.3□□□□□ -1.081e-6■■□□□ 13.7
YBX3P16989 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.596e-7■■□□□ 13.7
YBX3P16989 ADIPOR2-201ENST00000357103 4018 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.433e-7■■□□□ 13.7
YBX3P16989 ESD-201ENST00000378697 1079 ntTSL 5 BASIC5.76□□□□□ -1.496e-7■■□□□ 13.7
YBX3P16989 LTA4H-207ENST00000548852 1810 ntTSL 211.83□□□□□ -0.512e-6■■□□□ 13.7
YBX3P16989 ZMYND8-212ENST00000458360 3729 ntAPPRIS ALT2 TSL 1 (best) BASIC8.67□□□□□ -1.022e-7■■□□□ 13.7
YBX3P16989 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.193e-7■■□□□ 13.7
YBX3P16989 EPHB4-206ENST00000487222 5058 ntTSL 1 (best)15□□□□□ -0.013e-7■■□□□ 13.7
YBX3P16989 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC14.74□□□□□ -0.053e-7■■□□□ 13.7
YBX3P16989 EPHB4-202ENST00000360620 3789 ntTSL 1 (best) BASIC12.14□□□□□ -0.473e-7■■□□□ 13.7
YBX3P16989 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC20.43■□□□□ 0.863e-10■■□□□ 13.7
YBX3P16989 SNW1-201ENST00000261531 2163 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.581e-9■■□□□ 13.7
YBX3P16989 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC7.89□□□□□ -1.151e-9■■□□□ 13.7
YBX3P16989 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC25.57■■□□□ 1.681e-6■■□□□ 13.7
YBX3P16989 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.931e-6■■□□□ 13.7
YBX3P16989 COCH-203ENST00000460581 2688 ntTSL 2 BASIC16.21■□□□□ 0.181e-6■■□□□ 13.7
YBX3P16989 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.081e-6■■□□□ 13.7
YBX3P16989 COCH-204ENST00000468826 2129 ntTSL 27.54□□□□□ -1.21e-6■■□□□ 13.7
YBX3P16989 AHNAK-208ENST00000533365 584 ntAPPRIS ALT2 TSL 524.28■■□□□ 1.485e-8■■□□□ 13.7
YBX3P16989 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC19.27■□□□□ 0.685e-8■■□□□ 13.7
YBX3P16989 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.635e-8■■□□□ 13.7
YBX3P16989 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.35□□□□□ -1.555e-8■■□□□ 13.7
YBX3P16989 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.369e-7■■□□□ 13.7
YBX3P16989 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.689e-7■■□□□ 13.7
YBX3P16989 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.689e-7■■□□□ 13.7
YBX3P16989 TMEM219-206ENST00000569481 443 ntTSL 316.66■□□□□ 0.269e-7■■□□□ 13.7
YBX3P16989 TMEM219-207ENST00000570255 926 ntTSL 215.05■□□□□ -09e-7■■□□□ 13.7
YBX3P16989 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.43e-9■■□□□ 13.7
YBX3P16989 PRDX3-203ENST00000494433 2277 ntTSL 1 (best)8.82□□□□□ -16e-9■■□□□ 13.7
YBX3P16989 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.22e-6■■□□□ 13.7
YBX3P16989 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.145e-7■■□□□ 13.7
YBX3P16989 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC14.07□□□□□ -0.165e-7■■□□□ 13.7
YBX3P16989 TRAF7-207ENST00000570169 411 ntTSL 325.43■■□□□ 1.662e-9■■□□□ 13.7
YBX3P16989 KMT2C-206ENST00000424877 5874 ntTSL 56.17□□□□□ -1.429e-8■■□□□ 13.7
YBX3P16989 KMT2C-203ENST00000360104 11186 ntTSL 1 (best)5.47□□□□□ -1.539e-8■■□□□ 13.7
YBX3P16989 KMT2C-208ENST00000473186 12854 ntTSL 1 (best)4.23□□□□□ -1.739e-8■■□□□ 13.7
YBX3P16989 WDR41-221ENST00000512168 549 ntTSL 423■■□□□ 1.272e-7■■□□□ 13.7
YBX3P16989 WDR41-224ENST00000514451 463 ntTSL 318.91■□□□□ 0.622e-7■■□□□ 13.7
YBX3P16989 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.21e-7■■□□□ 13.7
YBX3P16989 WDR41-223ENST00000513917 596 ntTSL 48.28□□□□□ -1.082e-7■■□□□ 13.7
YBX3P16989 WDR41-209ENST00000507239 616 ntTSL 27.53□□□□□ -1.22e-7■■□□□ 13.7
YBX3P16989 WDR41-214ENST00000509858 461 ntTSL 37.06□□□□□ -1.282e-7■■□□□ 13.7
YBX3P16989 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC30.04■■■□□ 2.42e-9■■□□□ 13.7
YBX3P16989 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.22e-9■■□□□ 13.7
YBX3P16989 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC25.36■■□□□ 1.652e-9■■□□□ 13.7
YBX3P16989 ATP6V0B-208ENST00000473485 1664 ntTSL 225.13■■□□□ 1.612e-9■■□□□ 13.7
YBX3P16989 ATP6V0B-206ENST00000472277 536 ntTSL 324.64■■□□□ 1.542e-9■■□□□ 13.7
YBX3P16989 ATP6V0B-203ENST00000468183 2432 ntTSL 1 (best)22.41■■□□□ 1.182e-9■■□□□ 13.7
YBX3P16989 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC21.63■■□□□ 1.052e-9■■□□□ 13.7
YBX3P16989 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC21.63■■□□□ 1.052e-9■■□□□ 13.7
YBX3P16989 ATP6V0B-209ENST00000496131 962 ntTSL 318.57■□□□□ 0.562e-9■■□□□ 13.7
YBX3P16989 ATP6V0B-207ENST00000472505 411 ntTSL 517.12■□□□□ 0.332e-9■■□□□ 13.7
YBX3P16989 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC21.63■■□□□ 1.053e-6■■□□□ 13.7
YBX3P16989 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.112e-7■■□□□ 13.7
YBX3P16989 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.082e-7■■□□□ 13.7
YBX3P16989 POR-217ENST00000460892 603 ntTSL 217.58■□□□□ 0.41e-14■■□□□ 13.7
YBX3P16989 COLGALT1-206ENST00000601354 546 ntTSL 513.99□□□□□ -0.173e-8■■□□□ 13.7
YBX3P16989 COLGALT1-205ENST00000600474 552 ntTSL 410.64□□□□□ -0.713e-8■■□□□ 13.7
YBX3P16989 BTBD1-204ENST00000559652 797 ntTSL 38.17□□□□□ -1.11e-7■■□□□ 13.7
YBX3P16989 ZNHIT1-204ENST00000492315 3958 ntTSL 28.82□□□□□ -11e-8■■□□□ 13.7
YBX3P16989 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.116e-7■■□□□ 13.7
YBX3P16989 CENPX-203ENST00000577379 861 ntTSL 529.71■■■□□ 2.358e-8■■□□□ 13.7
YBX3P16989 CENPX-207ENST00000583767 894 ntTSL 325.16■■□□□ 1.628e-8■■□□□ 13.7
YBX3P16989 CENPX-205ENST00000580090 752 ntTSL 224.25■■□□□ 1.478e-8■■□□□ 13.7
YBX3P16989 GDI2-206ENST00000456041 918 ntTSL 515.39■□□□□ 0.052e-8■■□□□ 13.7
YBX3P16989 PIN1-202ENST00000380889 1670 ntTSL 1 (best)25.89■■□□□ 1.733e-9■■□□□ 13.7
YBX3P16989 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.393e-9■■□□□ 13.7
YBX3P16989 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.563e-9■■□□□ 13.7
YBX3P16989 PIN1-209ENST00000590540 702 ntTSL 318.37■□□□□ 0.533e-9■■□□□ 13.7
YBX3P16989 PIN1-204ENST00000586025 4022 ntTSL 215.62■□□□□ 0.093e-9■■□□□ 13.7
YBX3P16989 DYRK1A-207ENST00000462274 1189 ntTSL 1 (best)34.37■■■■□ 3.094e-9■■□□□ 13.7
Retrieved 100 of 29,075 protein–RNA pairs in 321.2 ms