Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.233e-18■□□□□ 9.6
SMNDC1O75940 LUC7L2-209ENST00000608368 551 ntTSL 413.05□□□□□ -0.323e-18■□□□□ 9.6
SMNDC1O75940 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC12.31□□□□□ -0.443e-18■□□□□ 9.6
SMNDC1O75940 C7orf55-LUC7L2-201ENST00000541515 1661 ntAPPRIS P1 TSL 2 BASIC10.19□□□□□ -0.783e-18■□□□□ 9.6
SMNDC1O75940 LUC7L2-201ENST00000263545 2287 ntTSL 5 BASIC8.18□□□□□ -1.13e-18■□□□□ 9.6
SMNDC1O75940 LUC7L2-205ENST00000463912 2382 ntTSL 27.31□□□□□ -1.243e-18■□□□□ 9.6
SMNDC1O75940 LUC7L2-207ENST00000498518 2837 ntTSL 24.45□□□□□ -1.73e-18■□□□□ 9.6
SMNDC1O75940 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.852e-6■□□□□ 9.6
SMNDC1O75940 BRD4-205ENST00000594841 1821 ntAPPRIS ALT2 TSL 1 (best)14.95□□□□□ -0.022e-6■□□□□ 9.6
SMNDC1O75940 BRD4-203ENST00000371835 4624 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.452e-6■□□□□ 9.6
SMNDC1O75940 BRD4-211ENST00000602230 751 ntTSL 311.72□□□□□ -0.532e-6■□□□□ 9.6
SMNDC1O75940 BRD4-201ENST00000263377 7169 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.572e-6■□□□□ 9.6
SMNDC1O75940 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.82□□□□□ -0.042e-12■□□□□ 9.6
SMNDC1O75940 DNAJC16-203ENST00000375849 3446 ntTSL 1 (best) BASIC10.38□□□□□ -0.752e-12■□□□□ 9.6
SMNDC1O75940 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.322e-12■□□□□ 9.6
SMNDC1O75940 DNAJC16-205ENST00000475133 6299 ntTSL 1 (best)6.55□□□□□ -1.362e-12■□□□□ 9.6
SMNDC1O75940 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.62□□□□□ -1.512e-12■□□□□ 9.6
SMNDC1O75940 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.566e-31■□□□□ 9.6
SMNDC1O75940 USP32-208ENST00000589335 691 ntTSL 517.69■□□□□ 0.426e-31■□□□□ 9.6
SMNDC1O75940 SCARNA20-201ENST00000516768 131 ntBASIC9.95□□□□□ -0.826e-31■□□□□ 9.6
SMNDC1O75940 USP32-211ENST00000590133 2563 ntTSL 29.19□□□□□ -0.946e-31■□□□□ 9.6
SMNDC1O75940 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC7.76□□□□□ -1.176e-31■□□□□ 9.6
SMNDC1O75940 NONO-203ENST00000373856 1921 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.511e-18■□□□□ 9.5
SMNDC1O75940 NONO-215ENST00000535149 2882 ntTSL 2 BASIC11.47□□□□□ -0.571e-18■□□□□ 9.5
SMNDC1O75940 NONO-202ENST00000373841 2606 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.621e-18■□□□□ 9.5
SMNDC1O75940 NONO-211ENST00000473525 1430 ntTSL 510.02□□□□□ -0.811e-18■□□□□ 9.5
SMNDC1O75940 NONO-201ENST00000276079 2713 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.831e-18■□□□□ 9.5
SMNDC1O75940 NONO-214ENST00000490044 3215 ntTSL 27.65□□□□□ -1.191e-18■□□□□ 9.5
SMNDC1O75940 NONO-212ENST00000474431 644 ntTSL 57.32□□□□□ -1.241e-18■□□□□ 9.5
SMNDC1O75940 NONO-210ENST00000472185 397 ntTSL 56.01□□□□□ -1.451e-18■□□□□ 9.5
SMNDC1O75940 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.211e-9■□□□□ 9.5
SMNDC1O75940 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC8.04□□□□□ -1.121e-9■□□□□ 9.5
SMNDC1O75940 USP9X-208ENST00000487625 581 ntTSL 26.7□□□□□ -1.341e-9■□□□□ 9.5
SMNDC1O75940 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.15■□□□□ 0.52e-9■□□□□ 9.5
SMNDC1O75940 AKAP8L-209ENST00000595879 790 ntTSL 316.66■□□□□ 0.261e-6■□□□□ 9.5
SMNDC1O75940 AKAP8L-212ENST00000596750 906 ntTSL 315.87■□□□□ 0.131e-6■□□□□ 9.5
SMNDC1O75940 SLC38A2-213ENST00000553252 846 ntTSL 215.18■□□□□ 0.021e-6■□□□□ 9.5
SMNDC1O75940 SLC38A2-210ENST00000551405 526 ntTSL 414.91□□□□□ -0.021e-6■□□□□ 9.5
SMNDC1O75940 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC14.53□□□□□ -0.082e-9■□□□□ 9.5
SMNDC1O75940 ABCC6-202ENST00000456970 4137 ntTSL 213.94□□□□□ -0.182e-9■□□□□ 9.5
SMNDC1O75940 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.182e-9■□□□□ 9.5
SMNDC1O75940 EXOC7-207ENST00000411744 2031 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.261e-6■□□□□ 9.5
SMNDC1O75940 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC13.24□□□□□ -0.291e-6■□□□□ 9.5
SMNDC1O75940 EXOC7-216ENST00000589210 4751 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.321e-6■□□□□ 9.5
SMNDC1O75940 EXOC7-201ENST00000332065 4596 ntAPPRIS P3 TSL 2 BASIC12.23□□□□□ -0.451e-6■□□□□ 9.5
SMNDC1O75940 EXOC7-221ENST00000634349 2124 ntTSL 1 (best) BASIC11.95□□□□□ -0.51e-6■□□□□ 9.5
SMNDC1O75940 EXOC7-205ENST00000405575 2208 ntTSL 5 BASIC11.58□□□□□ -0.561e-6■□□□□ 9.5
SMNDC1O75940 EXOC7-202ENST00000335146 3519 ntTSL 1 (best) BASIC11.16□□□□□ -0.621e-6■□□□□ 9.5
SMNDC1O75940 EXOC7-203ENST00000357231 1924 ntTSL 1 (best)10.72□□□□□ -0.691e-6■□□□□ 9.5
SMNDC1O75940 CCAR1-216ENST00000543706 869 ntTSL 510.42□□□□□ -0.741e-6■□□□□ 9.5
SMNDC1O75940 EXOC7-219ENST00000592559 645 ntTSL 510.19□□□□□ -0.781e-6■□□□□ 9.5
SMNDC1O75940 EXOC7-220ENST00000607838 3353 ntTSL 5 BASIC9.1□□□□□ -0.951e-6■□□□□ 9.5
SMNDC1O75940 CCAR1-210ENST00000539250 701 ntTSL 27.73□□□□□ -1.171e-6■□□□□ 9.5
SMNDC1O75940 SLC38A2-201ENST00000256689 4888 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.876e-7■□□□□ 9.5
SMNDC1O75940 SLC38A2-208ENST00000549258 4384 ntTSL 24.42□□□□□ -1.76e-7■□□□□ 9.5
SMNDC1O75940 SLC38A2-211ENST00000552414 566 ntTSL 39.53□□□□□ -0.884e-9■□□□□ 9.5
SMNDC1O75940 SLC38A2-205ENST00000548236 865 ntTSL 28.58□□□□□ -1.044e-9■□□□□ 9.5
SMNDC1O75940 SLC38A2-207ENST00000548870 576 ntTSL 26.42□□□□□ -1.384e-9■□□□□ 9.5
SMNDC1O75940 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC5.99□□□□□ -1.454e-9■□□□□ 9.5
SMNDC1O75940 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.36□□□□□ -1.714e-9■□□□□ 9.5
SMNDC1O75940 INTS11-220ENST00000493534 896 ntTSL 317.57■□□□□ 0.42e-7■□□□□ 9.5
SMNDC1O75940 INTS11-224ENST00000498476 554 ntTSL 416.79■□□□□ 0.282e-7■□□□□ 9.5
SMNDC1O75940 INTS11-239ENST00000531019 549 ntTSL 416.79■□□□□ 0.282e-7■□□□□ 9.5
SMNDC1O75940 INTS11-215ENST00000470679 584 ntTSL 516.71■□□□□ 0.272e-7■□□□□ 9.5
SMNDC1O75940 INTS11-219ENST00000490853 704 ntTSL 316.69■□□□□ 0.262e-7■□□□□ 9.5
SMNDC1O75940 INTS11-226ENST00000525285 579 ntTSL 413.27□□□□□ -0.292e-7■□□□□ 9.5
SMNDC1O75940 INTS11-244ENST00000532952 773 ntTSL 312.2□□□□□ -0.462e-7■□□□□ 9.5
SMNDC1O75940 INTS11-246ENST00000534345 485 ntTSL 410.72□□□□□ -0.692e-7■□□□□ 9.5
SMNDC1O75940 HNRNPH1-229ENST00000518548 527 ntTSL 24.71□□□□□ -1.665e-28■□□□□ 9.5
SMNDC1O75940 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.271e-6■□□□□ 9.5
SMNDC1O75940 CDK5RAP3-236ENST00000584991 1862 ntTSL 515.21■□□□□ 0.032e-22■□□□□ 9.5
SMNDC1O75940 CDK5RAP3-237ENST00000585163 2519 ntTSL 1 (best)14.8□□□□□ -0.042e-22■□□□□ 9.5
SMNDC1O75940 CDK5RAP3-218ENST00000580391 1957 ntTSL 513.8□□□□□ -0.22e-22■□□□□ 9.5
SMNDC1O75940 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.272e-22■□□□□ 9.5
SMNDC1O75940 CDK5RAP3-232ENST00000584168 2684 ntTSL 513.35□□□□□ -0.272e-22■□□□□ 9.5
SMNDC1O75940 CDK5RAP3-219ENST00000580670 1768 ntTSL 513.25□□□□□ -0.292e-22■□□□□ 9.5
SMNDC1O75940 CDK5RAP3-202ENST00000536708 1975 ntTSL 2 BASIC13.16□□□□□ -0.32e-22■□□□□ 9.5
SMNDC1O75940 CDK5RAP3-217ENST00000580287 2609 ntTSL 1 (best)12.78□□□□□ -0.362e-22■□□□□ 9.5
SMNDC1O75940 AC018521.1-202ENST00000641877 2655 ntBASIC12.68□□□□□ -0.382e-22■□□□□ 9.5
SMNDC1O75940 CDK5RAP3-231ENST00000584063 2759 ntTSL 1 (best)11.94□□□□□ -0.52e-22■□□□□ 9.5
SMNDC1O75940 CDK5RAP3-205ENST00000577802 415 ntTSL 211.8□□□□□ -0.522e-22■□□□□ 9.5
SMNDC1O75940 CDK5RAP3-212ENST00000579175 867 ntTSL 311.48□□□□□ -0.572e-22■□□□□ 9.5
SMNDC1O75940 CDK5RAP3-223ENST00000582114 647 ntTSL 210.54□□□□□ -0.722e-22■□□□□ 9.5
SMNDC1O75940 CDK5RAP3-229ENST00000583697 852 ntTSL 37.9□□□□□ -1.142e-22■□□□□ 9.5
SMNDC1O75940 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.964e-6■□□□□ 9.5
SMNDC1O75940 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.65■□□□□ 0.94e-6■□□□□ 9.5
SMNDC1O75940 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.894e-6■□□□□ 9.5
SMNDC1O75940 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.08■□□□□ 0.814e-6■□□□□ 9.5
SMNDC1O75940 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.78■□□□□ 0.764e-6■□□□□ 9.5
SMNDC1O75940 OGFOD2-213ENST00000540324 1828 ntTSL 1 (best)19.25■□□□□ 0.674e-6■□□□□ 9.5
SMNDC1O75940 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.614e-6■□□□□ 9.5
SMNDC1O75940 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.2■□□□□ 0.54e-6■□□□□ 9.5
SMNDC1O75940 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.87■□□□□ 0.454e-6■□□□□ 9.5
SMNDC1O75940 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.8■□□□□ 0.444e-6■□□□□ 9.5
SMNDC1O75940 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.02■□□□□ 0.324e-6■□□□□ 9.5
SMNDC1O75940 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.01■□□□□ 0.314e-6■□□□□ 9.5
SMNDC1O75940 OGFOD2-223ENST00000545396 1341 ntTSL 516.89■□□□□ 0.294e-6■□□□□ 9.5
SMNDC1O75940 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC16.66■□□□□ 0.264e-6■□□□□ 9.5
SMNDC1O75940 C16orf58-210ENST00000568491 2422 ntTSL 216.4■□□□□ 0.224e-6■□□□□ 9.5
SMNDC1O75940 TMC6-220ENST00000591756 475 ntTSL 216.12■□□□□ 0.174e-6■□□□□ 9.5
Retrieved 100 of 11,362 protein–RNA pairs in 163.4 ms