Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC21.77■■□□□ 1.08
PRPF40AO75400 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC21.77■■□□□ 1.08
PRPF40AO75400 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
PRPF40AO75400 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PRPF40AO75400 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PRPF40AO75400 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
PRPF40AO75400 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC21.77■■□□□ 1.08
PRPF40AO75400 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
PRPF40AO75400 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PRPF40AO75400 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
PRPF40AO75400 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
PRPF40AO75400 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PRPF40AO75400 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PRPF40AO75400 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PRPF40AO75400 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
PRPF40AO75400 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PRPF40AO75400 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
PRPF40AO75400 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC21.76■■□□□ 1.07
PRPF40AO75400 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC21.76■■□□□ 1.07
PRPF40AO75400 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC21.76■■□□□ 1.07
PRPF40AO75400 MAX-217ENST00000557277 728 ntTSL 3 BASIC21.76■■□□□ 1.07
PRPF40AO75400 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PRPF40AO75400 AC060766.5-201ENST00000590539 871 ntBASIC21.76■■□□□ 1.07
PRPF40AO75400 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
PRPF40AO75400 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PRPF40AO75400 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PRPF40AO75400 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC21.76■■□□□ 1.07
PRPF40AO75400 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
PRPF40AO75400 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC21.76■■□□□ 1.07
PRPF40AO75400 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC21.76■■□□□ 1.07
PRPF40AO75400 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PRPF40AO75400 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PRPF40AO75400 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC21.75■■□□□ 1.07
PRPF40AO75400 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PRPF40AO75400 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
PRPF40AO75400 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC21.75■■□□□ 1.07
PRPF40AO75400 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
PRPF40AO75400 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
PRPF40AO75400 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
PRPF40AO75400 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PRPF40AO75400 AC134043.2-201ENST00000624206 2238 ntBASIC21.75■■□□□ 1.07
PRPF40AO75400 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC21.75■■□□□ 1.07
PRPF40AO75400 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PRPF40AO75400 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PRPF40AO75400 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC21.75■■□□□ 1.07
PRPF40AO75400 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC21.75■■□□□ 1.07
PRPF40AO75400 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
PRPF40AO75400 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC21.75■■□□□ 1.07
PRPF40AO75400 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PRPF40AO75400 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC21.75■■□□□ 1.07
PRPF40AO75400 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PRPF40AO75400 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PRPF40AO75400 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC21.74■■□□□ 1.07
PRPF40AO75400 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PRPF40AO75400 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PRPF40AO75400 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC21.74■■□□□ 1.07
PRPF40AO75400 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PRPF40AO75400 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PRPF40AO75400 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
PRPF40AO75400 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC21.74■■□□□ 1.07
PRPF40AO75400 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC21.74■■□□□ 1.07
PRPF40AO75400 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC21.74■■□□□ 1.07
PRPF40AO75400 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC21.74■■□□□ 1.07
PRPF40AO75400 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PRPF40AO75400 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PRPF40AO75400 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC21.74■■□□□ 1.07
PRPF40AO75400 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
PRPF40AO75400 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PRPF40AO75400 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC21.74■■□□□ 1.07
PRPF40AO75400 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
PRPF40AO75400 LINC00896-202ENST00000609602 2128 ntBASIC21.74■■□□□ 1.07
PRPF40AO75400 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC21.74■■□□□ 1.07
PRPF40AO75400 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PRPF40AO75400 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
PRPF40AO75400 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC21.74■■□□□ 1.07
PRPF40AO75400 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PRPF40AO75400 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PRPF40AO75400 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
PRPF40AO75400 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PRPF40AO75400 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PRPF40AO75400 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
PRPF40AO75400 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC21.73■■□□□ 1.07
PRPF40AO75400 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
PRPF40AO75400 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PRPF40AO75400 TSPY21P-201ENST00000433481 731 ntBASIC21.73■■□□□ 1.07
PRPF40AO75400 FAM201B-201ENST00000458407 597 ntBASIC21.73■■□□□ 1.07
PRPF40AO75400 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC21.73■■□□□ 1.07
PRPF40AO75400 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PRPF40AO75400 TMEM191A-211ENST00000637163 1067 ntBASIC21.73■■□□□ 1.07
PRPF40AO75400 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PRPF40AO75400 AC092368.3-202ENST00000574180 1591 ntBASIC21.73■■□□□ 1.07
PRPF40AO75400 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC21.73■■□□□ 1.07
PRPF40AO75400 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PRPF40AO75400 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC21.73■■□□□ 1.07
PRPF40AO75400 HTR7P1-202ENST00000624664 4411 ntBASIC21.73■■□□□ 1.07
PRPF40AO75400 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PRPF40AO75400 HEIH-201ENST00000623091 1652 ntBASIC21.72■■□□□ 1.07
PRPF40AO75400 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC21.72■■□□□ 1.07
PRPF40AO75400 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PRPF40AO75400 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms