Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP2AO43633 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP2AO43633 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP2AO43633 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP2AO43633 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP2AO43633 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP2AO43633 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC21.04■□□□□ 0.96
CHMP2AO43633 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP2AO43633 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP2AO43633 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC21.04■□□□□ 0.96
CHMP2AO43633 GAD2-202ENST00000376248 680 ntTSL 5 BASIC21.04■□□□□ 0.96
CHMP2AO43633 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC21.04■□□□□ 0.96
CHMP2AO43633 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC21.04■□□□□ 0.96
CHMP2AO43633 TSPY5P-201ENST00000426936 936 ntBASIC21.04■□□□□ 0.96
CHMP2AO43633 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP2AO43633 ETFA-216ENST00000560726 942 ntTSL 3 BASIC21.04■□□□□ 0.96
CHMP2AO43633 GCSHP2-201ENST00000560971 527 ntBASIC21.04■□□□□ 0.96
CHMP2AO43633 AL445228.2-201ENST00000605589 952 ntBASIC21.04■□□□□ 0.96
CHMP2AO43633 AC024243.1-201ENST00000609234 778 ntBASIC21.04■□□□□ 0.96
CHMP2AO43633 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP2AO43633 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP2AO43633 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP2AO43633 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP2AO43633 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP2AO43633 HEIH-201ENST00000623091 1652 ntBASIC21.04■□□□□ 0.96
CHMP2AO43633 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP2AO43633 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC21.04■□□□□ 0.96
CHMP2AO43633 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP2AO43633 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC21.04■□□□□ 0.96
CHMP2AO43633 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP2AO43633 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP2AO43633 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC21.04■□□□□ 0.96
CHMP2AO43633 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC21.04■□□□□ 0.96
CHMP2AO43633 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC21.04■□□□□ 0.96
CHMP2AO43633 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP2AO43633 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP2AO43633 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP2AO43633 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP2AO43633 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP2AO43633 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC21.03■□□□□ 0.96
CHMP2AO43633 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP2AO43633 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CHMP2AO43633 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP2AO43633 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP2AO43633 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP2AO43633 AP000523.1-201ENST00000398242 1049 ntBASIC21.03■□□□□ 0.96
CHMP2AO43633 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC21.03■□□□□ 0.96
CHMP2AO43633 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC21.03■□□□□ 0.96
CHMP2AO43633 ELP6-205ENST00000439305 880 ntTSL 2 BASIC21.03■□□□□ 0.96
CHMP2AO43633 AC092647.4-201ENST00000457211 535 ntBASIC21.03■□□□□ 0.96
CHMP2AO43633 KRT18P35-201ENST00000510488 1269 ntBASIC21.03■□□□□ 0.96
CHMP2AO43633 AC022616.7-201ENST00000525383 220 ntBASIC21.03■□□□□ 0.96
CHMP2AO43633 NME3-204ENST00000563498 920 ntTSL 2 BASIC21.03■□□□□ 0.96
CHMP2AO43633 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC21.03■□□□□ 0.96
CHMP2AO43633 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC21.03■□□□□ 0.96
CHMP2AO43633 NEK4P2-201ENST00000580004 1012 ntBASIC21.03■□□□□ 0.96
CHMP2AO43633 NTF6B-201ENST00000591913 560 ntBASIC21.03■□□□□ 0.96
CHMP2AO43633 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP2AO43633 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
CHMP2AO43633 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
CHMP2AO43633 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP2AO43633 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP2AO43633 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP2AO43633 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP2AO43633 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP2AO43633 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
CHMP2AO43633 AC006333.2-201ENST00000607957 2099 ntBASIC21.03■□□□□ 0.96
CHMP2AO43633 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC21.03■□□□□ 0.96
CHMP2AO43633 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP2AO43633 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP2AO43633 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP2AO43633 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
CHMP2AO43633 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP2AO43633 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP2AO43633 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
CHMP2AO43633 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
CHMP2AO43633 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP2AO43633 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP2AO43633 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP2AO43633 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
CHMP2AO43633 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP2AO43633 AL359075.1-203ENST00000462729 1002 ntBASIC21.02■□□□□ 0.96
CHMP2AO43633 AC063952.2-201ENST00000498792 1227 ntBASIC21.02■□□□□ 0.96
CHMP2AO43633 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC21.02■□□□□ 0.96
CHMP2AO43633 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP2AO43633 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC21.02■□□□□ 0.96
CHMP2AO43633 AL590326.2-201ENST00000625139 305 ntBASIC21.02■□□□□ 0.96
CHMP2AO43633 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP2AO43633 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP2AO43633 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC21.02■□□□□ 0.96
CHMP2AO43633 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP2AO43633 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC21.02■□□□□ 0.95
CHMP2AO43633 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CHMP2AO43633 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
CHMP2AO43633 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
CHMP2AO43633 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CHMP2AO43633 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CHMP2AO43633 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHMP2AO43633 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHMP2AO43633 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms