Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
MSH4O15457 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSH4O15457 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
MSH4O15457 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC21.02■□□□□ 0.96
MSH4O15457 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC21.02■□□□□ 0.96
MSH4O15457 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
MSH4O15457 KRT8P7-201ENST00000533003 1432 ntBASIC21.02■□□□□ 0.96
MSH4O15457 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSH4O15457 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
MSH4O15457 AC018445.3-201ENST00000624177 1945 ntBASIC21.02■□□□□ 0.95
MSH4O15457 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
MSH4O15457 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
MSH4O15457 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH4O15457 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH4O15457 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC21.01■□□□□ 0.95
MSH4O15457 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH4O15457 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
MSH4O15457 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH4O15457 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH4O15457 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH4O15457 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH4O15457 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC21.01■□□□□ 0.95
MSH4O15457 SPDYE15P-201ENST00000424157 909 ntBASIC21.01■□□□□ 0.95
MSH4O15457 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC21.01■□□□□ 0.95
MSH4O15457 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC21.01■□□□□ 0.95
MSH4O15457 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH4O15457 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC21.01■□□□□ 0.95
MSH4O15457 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC21.01■□□□□ 0.95
MSH4O15457 HOMER2P1-201ENST00000455653 964 ntBASIC21.01■□□□□ 0.95
MSH4O15457 AL359075.1-203ENST00000462729 1002 ntBASIC21.01■□□□□ 0.95
MSH4O15457 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
MSH4O15457 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC21.01■□□□□ 0.95
MSH4O15457 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC21.01■□□□□ 0.95
MSH4O15457 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
MSH4O15457 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
MSH4O15457 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC21.01■□□□□ 0.95
MSH4O15457 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
MSH4O15457 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC21.01■□□□□ 0.95
MSH4O15457 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC21.01■□□□□ 0.95
MSH4O15457 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
MSH4O15457 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH4O15457 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH4O15457 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH4O15457 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSH4O15457 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
MSH4O15457 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
MSH4O15457 CROCCP3-202ENST00000420820 1947 ntBASIC21■□□□□ 0.95
MSH4O15457 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSH4O15457 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSH4O15457 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC21■□□□□ 0.95
MSH4O15457 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC21■□□□□ 0.95
MSH4O15457 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC21■□□□□ 0.95
MSH4O15457 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC21■□□□□ 0.95
MSH4O15457 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSH4O15457 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC21■□□□□ 0.95
MSH4O15457 AC092647.4-201ENST00000457211 535 ntBASIC21■□□□□ 0.95
MSH4O15457 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC21■□□□□ 0.95
MSH4O15457 AC104390.1-201ENST00000555663 520 ntBASIC21■□□□□ 0.95
MSH4O15457 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC21■□□□□ 0.95
MSH4O15457 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC21■□□□□ 0.95
MSH4O15457 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC21■□□□□ 0.95
MSH4O15457 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC21■□□□□ 0.95
MSH4O15457 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC21■□□□□ 0.95
MSH4O15457 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
MSH4O15457 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC21■□□□□ 0.95
MSH4O15457 MYC-208ENST00000641036 567 ntBASIC21■□□□□ 0.95
MSH4O15457 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC21■□□□□ 0.95
MSH4O15457 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
MSH4O15457 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC21■□□□□ 0.95
MSH4O15457 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
MSH4O15457 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC21■□□□□ 0.95
MSH4O15457 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
MSH4O15457 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSH4O15457 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC21■□□□□ 0.95
MSH4O15457 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSH4O15457 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC21■□□□□ 0.95
MSH4O15457 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSH4O15457 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
MSH4O15457 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH4O15457 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH4O15457 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH4O15457 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH4O15457 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH4O15457 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.99■□□□□ 0.95
MSH4O15457 AC093525.10-201ENST00000625130 1569 ntBASIC20.99■□□□□ 0.95
MSH4O15457 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
MSH4O15457 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH4O15457 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH4O15457 STARP1-201ENST00000397973 869 ntBASIC20.99■□□□□ 0.95
MSH4O15457 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
MSH4O15457 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC20.99■□□□□ 0.95
MSH4O15457 KRT18P41-201ENST00000518924 1277 ntBASIC20.99■□□□□ 0.95
MSH4O15457 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC20.99■□□□□ 0.95
MSH4O15457 NAT14-202ENST00000587400 416 ntTSL 5 BASIC20.99■□□□□ 0.95
MSH4O15457 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.99■□□□□ 0.95
MSH4O15457 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
MSH4O15457 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
MSH4O15457 BX323043.1-201ENST00000641006 1765 ntBASIC20.99■□□□□ 0.95
MSH4O15457 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSH4O15457 AL499627.1-201ENST00000569373 2188 ntBASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms