Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.24■□□□□ 0.51
HDAC3O15379 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
HDAC3O15379 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.24■□□□□ 0.51
HDAC3O15379 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.24■□□□□ 0.51
HDAC3O15379 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.24■□□□□ 0.51
HDAC3O15379 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
HDAC3O15379 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
HDAC3O15379 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
HDAC3O15379 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
HDAC3O15379 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.24■□□□□ 0.51
HDAC3O15379 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.24■□□□□ 0.51
HDAC3O15379 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HDAC3O15379 AL137784.2-201ENST00000607332 1000 ntBASIC18.24■□□□□ 0.51
HDAC3O15379 AC083880.1-201ENST00000608266 535 ntBASIC18.24■□□□□ 0.51
HDAC3O15379 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.24■□□□□ 0.51
HDAC3O15379 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
HDAC3O15379 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HDAC3O15379 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
HDAC3O15379 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.24■□□□□ 0.51
HDAC3O15379 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HDAC3O15379 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
HDAC3O15379 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HDAC3O15379 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
HDAC3O15379 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
HDAC3O15379 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
HDAC3O15379 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HDAC3O15379 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.24■□□□□ 0.51
HDAC3O15379 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HDAC3O15379 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HDAC3O15379 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.23■□□□□ 0.51
HDAC3O15379 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.23■□□□□ 0.51
HDAC3O15379 AC112777.1-201ENST00000540175 1423 ntBASIC18.23■□□□□ 0.51
HDAC3O15379 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HDAC3O15379 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HDAC3O15379 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
HDAC3O15379 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
HDAC3O15379 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HDAC3O15379 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HDAC3O15379 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.23■□□□□ 0.51
HDAC3O15379 KRT8P32-201ENST00000512863 1461 ntBASIC18.23■□□□□ 0.51
HDAC3O15379 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HDAC3O15379 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HDAC3O15379 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.23■□□□□ 0.51
HDAC3O15379 DLX3-202ENST00000512495 834 ntTSL 2 BASIC18.23■□□□□ 0.51
HDAC3O15379 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.23■□□□□ 0.51
HDAC3O15379 PRKY-204ENST00000533551 1019 ntBASIC18.23■□□□□ 0.51
HDAC3O15379 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.23■□□□□ 0.51
HDAC3O15379 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.23■□□□□ 0.51
HDAC3O15379 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
HDAC3O15379 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HDAC3O15379 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.23■□□□□ 0.51
HDAC3O15379 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
HDAC3O15379 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.23■□□□□ 0.51
HDAC3O15379 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HDAC3O15379 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.23■□□□□ 0.51
HDAC3O15379 FZD10-202ENST00000539839 3282 ntBASIC18.22■□□□□ 0.51
HDAC3O15379 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HDAC3O15379 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.22■□□□□ 0.51
HDAC3O15379 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HDAC3O15379 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HDAC3O15379 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
HDAC3O15379 NBPF21P-201ENST00000425093 1451 ntBASIC18.22■□□□□ 0.51
HDAC3O15379 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
HDAC3O15379 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
HDAC3O15379 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
HDAC3O15379 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HDAC3O15379 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HDAC3O15379 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.22■□□□□ 0.51
HDAC3O15379 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.22■□□□□ 0.51
HDAC3O15379 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.22■□□□□ 0.51
HDAC3O15379 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.22■□□□□ 0.51
HDAC3O15379 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HDAC3O15379 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.22■□□□□ 0.51
HDAC3O15379 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC18.22■□□□□ 0.51
HDAC3O15379 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.22■□□□□ 0.51
HDAC3O15379 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.22■□□□□ 0.51
HDAC3O15379 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.22■□□□□ 0.51
HDAC3O15379 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.22■□□□□ 0.51
HDAC3O15379 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.22■□□□□ 0.51
HDAC3O15379 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
HDAC3O15379 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HDAC3O15379 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
HDAC3O15379 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HDAC3O15379 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.22■□□□□ 0.51
HDAC3O15379 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.22■□□□□ 0.51
HDAC3O15379 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HDAC3O15379 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HDAC3O15379 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
HDAC3O15379 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
HDAC3O15379 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
HDAC3O15379 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HDAC3O15379 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HDAC3O15379 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
HDAC3O15379 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HDAC3O15379 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HDAC3O15379 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HDAC3O15379 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.21■□□□□ 0.51
HDAC3O15379 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
HDAC3O15379 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.21■□□□□ 0.51
HDAC3O15379 AC093677.2-201ENST00000600169 1863 ntBASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms