Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC21.2■□□□□ 0.98
COL20A1Q9P218 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL20A1Q9P218 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL20A1Q9P218 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL20A1Q9P218 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL20A1Q9P218 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC21.2■□□□□ 0.98
COL20A1Q9P218 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL20A1Q9P218 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL20A1Q9P218 AL162741.1-201ENST00000565563 1558 ntBASIC21.19■□□□□ 0.98
COL20A1Q9P218 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
COL20A1Q9P218 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL20A1Q9P218 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC21.19■□□□□ 0.98
COL20A1Q9P218 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL20A1Q9P218 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL20A1Q9P218 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
COL20A1Q9P218 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC21.19■□□□□ 0.98
COL20A1Q9P218 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL20A1Q9P218 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL20A1Q9P218 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC21.19■□□□□ 0.98
COL20A1Q9P218 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC21.19■□□□□ 0.98
COL20A1Q9P218 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL20A1Q9P218 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL20A1Q9P218 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
COL20A1Q9P218 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL20A1Q9P218 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL20A1Q9P218 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL20A1Q9P218 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL20A1Q9P218 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL20A1Q9P218 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL20A1Q9P218 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL20A1Q9P218 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL20A1Q9P218 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL20A1Q9P218 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL20A1Q9P218 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
COL20A1Q9P218 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL20A1Q9P218 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC21.18■□□□□ 0.98
COL20A1Q9P218 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL20A1Q9P218 NPAP1P7-201ENST00000613027 823 ntBASIC21.18■□□□□ 0.98
COL20A1Q9P218 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC21.18■□□□□ 0.98
COL20A1Q9P218 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL20A1Q9P218 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL20A1Q9P218 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL20A1Q9P218 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC21.18■□□□□ 0.98
COL20A1Q9P218 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
COL20A1Q9P218 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC21.18■□□□□ 0.98
COL20A1Q9P218 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL20A1Q9P218 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL20A1Q9P218 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC21.18■□□□□ 0.98
COL20A1Q9P218 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
COL20A1Q9P218 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC21.18■□□□□ 0.98
COL20A1Q9P218 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL20A1Q9P218 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL20A1Q9P218 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL20A1Q9P218 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL20A1Q9P218 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
COL20A1Q9P218 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL20A1Q9P218 MIR662-201ENST00000384847 95 ntBASIC21.17■□□□□ 0.98
COL20A1Q9P218 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL20A1Q9P218 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
COL20A1Q9P218 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL20A1Q9P218 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC21.17■□□□□ 0.98
COL20A1Q9P218 AC011498.5-201ENST00000592027 486 ntBASIC21.17■□□□□ 0.98
COL20A1Q9P218 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL20A1Q9P218 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC21.17■□□□□ 0.98
COL20A1Q9P218 CYP51A1P1-201ENST00000492267 1507 ntBASIC21.17■□□□□ 0.98
COL20A1Q9P218 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL20A1Q9P218 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL20A1Q9P218 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL20A1Q9P218 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
COL20A1Q9P218 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
COL20A1Q9P218 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC21.17■□□□□ 0.98
COL20A1Q9P218 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC21.17■□□□□ 0.98
COL20A1Q9P218 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC21.17■□□□□ 0.98
COL20A1Q9P218 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
COL20A1Q9P218 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL20A1Q9P218 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL20A1Q9P218 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL20A1Q9P218 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL20A1Q9P218 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL20A1Q9P218 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL20A1Q9P218 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL20A1Q9P218 HCG4P8-203ENST00000443049 980 ntBASIC21.16■□□□□ 0.98
COL20A1Q9P218 TOLLIP-AS1-201ENST00000530897 939 ntBASIC21.16■□□□□ 0.98
COL20A1Q9P218 RNF126P1-202ENST00000569893 925 ntBASIC21.16■□□□□ 0.98
COL20A1Q9P218 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
COL20A1Q9P218 SLC25A24-204ENST00000569674 2357 ntBASIC21.16■□□□□ 0.98
COL20A1Q9P218 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL20A1Q9P218 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC21.16■□□□□ 0.98
COL20A1Q9P218 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL20A1Q9P218 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL20A1Q9P218 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL20A1Q9P218 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC21.15■□□□□ 0.98
COL20A1Q9P218 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL20A1Q9P218 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC21.15■□□□□ 0.98
COL20A1Q9P218 KRT8P50-201ENST00000562022 1438 ntBASIC21.15■□□□□ 0.98
COL20A1Q9P218 AC016734.2-201ENST00000624325 1377 ntBASIC21.15■□□□□ 0.98
COL20A1Q9P218 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL20A1Q9P218 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
COL20A1Q9P218 ATP5G2P1-201ENST00000433580 426 ntBASIC21.15■□□□□ 0.98
COL20A1Q9P218 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms