Protein–RNA interactions for Protein: Q9H0I3

CCDC113, Coiled-coil domain-containing protein 113, humanhuman

Predictions only

Length 377 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC113Q9H0I3 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC113Q9H0I3 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC113Q9H0I3 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC113Q9H0I3 KRT8P45-201ENST00000414328 1447 ntBASIC20.76■□□□□ 0.91
CCDC113Q9H0I3 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC113Q9H0I3 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CCDC113Q9H0I3 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
CCDC113Q9H0I3 AC018445.3-201ENST00000624177 1945 ntBASIC20.76■□□□□ 0.91
CCDC113Q9H0I3 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC113Q9H0I3 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 LIN28AP1-201ENST00000429574 405 ntBASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 AC098818.2-201ENST00000564925 2320 ntBASIC20.75■□□□□ 0.91
CCDC113Q9H0I3 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 GPAT2P1-201ENST00000444924 1672 ntBASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 AC104076.2-201ENST00000448912 469 ntBASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC113Q9H0I3 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC113Q9H0I3 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC113Q9H0I3 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC113Q9H0I3 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC113Q9H0I3 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC113Q9H0I3 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC113Q9H0I3 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC113Q9H0I3 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC113Q9H0I3 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC113Q9H0I3 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC113Q9H0I3 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CCDC113Q9H0I3 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC113Q9H0I3 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC113Q9H0I3 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.73■□□□□ 0.91
CCDC113Q9H0I3 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC20.73■□□□□ 0.91
CCDC113Q9H0I3 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC20.73■□□□□ 0.91
CCDC113Q9H0I3 ATP5G1P1-201ENST00000448724 379 ntBASIC20.73■□□□□ 0.91
CCDC113Q9H0I3 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
CCDC113Q9H0I3 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC113Q9H0I3 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC113Q9H0I3 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CCDC113Q9H0I3 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC113Q9H0I3 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
CCDC113Q9H0I3 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
CCDC113Q9H0I3 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC113Q9H0I3 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC113Q9H0I3 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC113Q9H0I3 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.72■□□□□ 0.91
CCDC113Q9H0I3 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC113Q9H0I3 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.72■□□□□ 0.91
CCDC113Q9H0I3 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC113Q9H0I3 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC113Q9H0I3 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC113Q9H0I3 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms