Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC20.52■□□□□ 0.88
TRAIPQ9BWF2 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.52■□□□□ 0.87
TRAIPQ9BWF2 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.52■□□□□ 0.87
TRAIPQ9BWF2 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.87
TRAIPQ9BWF2 Z82202.1-201ENST00000623446 1880 ntBASIC20.52■□□□□ 0.87
TRAIPQ9BWF2 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRAIPQ9BWF2 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRAIPQ9BWF2 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
TRAIPQ9BWF2 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRAIPQ9BWF2 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.51■□□□□ 0.87
TRAIPQ9BWF2 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRAIPQ9BWF2 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRAIPQ9BWF2 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.51■□□□□ 0.87
TRAIPQ9BWF2 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRAIPQ9BWF2 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
TRAIPQ9BWF2 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRAIPQ9BWF2 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRAIPQ9BWF2 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRAIPQ9BWF2 MCCD1P1-208ENST00000445732 328 ntBASIC20.51■□□□□ 0.87
TRAIPQ9BWF2 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.51■□□□□ 0.87
TRAIPQ9BWF2 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.51■□□□□ 0.87
TRAIPQ9BWF2 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRAIPQ9BWF2 NMU-205ENST00000511469 756 ntTSL 3 BASIC20.51■□□□□ 0.87
TRAIPQ9BWF2 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRAIPQ9BWF2 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRAIPQ9BWF2 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRAIPQ9BWF2 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRAIPQ9BWF2 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.51■□□□□ 0.87
TRAIPQ9BWF2 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRAIPQ9BWF2 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRAIPQ9BWF2 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC20.5■□□□□ 0.87
TRAIPQ9BWF2 TNXA-203ENST00000507684 2038 ntBASIC20.49■□□□□ 0.87
TRAIPQ9BWF2 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.49■□□□□ 0.87
TRAIPQ9BWF2 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRAIPQ9BWF2 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TRAIPQ9BWF2 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.49■□□□□ 0.87
TRAIPQ9BWF2 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC20.49■□□□□ 0.87
TRAIPQ9BWF2 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
TRAIPQ9BWF2 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TRAIPQ9BWF2 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
TRAIPQ9BWF2 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC20.49■□□□□ 0.87
TRAIPQ9BWF2 RASA4DP-201ENST00000460726 1199 ntBASIC20.49■□□□□ 0.87
TRAIPQ9BWF2 AC034232.1-201ENST00000506026 1064 ntBASIC20.49■□□□□ 0.87
TRAIPQ9BWF2 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC20.49■□□□□ 0.87
TRAIPQ9BWF2 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.49■□□□□ 0.87
TRAIPQ9BWF2 FGF14-AS2-201ENST00000606448 1074 ntBASIC20.49■□□□□ 0.87
TRAIPQ9BWF2 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
TRAIPQ9BWF2 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC20.49■□□□□ 0.87
TRAIPQ9BWF2 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRAIPQ9BWF2 LINC01311-201ENST00000565162 1445 ntBASIC20.49■□□□□ 0.87
TRAIPQ9BWF2 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRAIPQ9BWF2 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRAIPQ9BWF2 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC20.49■□□□□ 0.87
TRAIPQ9BWF2 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRAIPQ9BWF2 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC20.49■□□□□ 0.87
TRAIPQ9BWF2 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRAIPQ9BWF2 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TRAIPQ9BWF2 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRAIPQ9BWF2 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRAIPQ9BWF2 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TRAIPQ9BWF2 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TRAIPQ9BWF2 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TRAIPQ9BWF2 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TRAIPQ9BWF2 HBZP1-201ENST00000354915 429 ntBASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms