Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLHC1Q8NHS4 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.02■□□□□ 0.48
CLHC1Q8NHS4 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLHC1Q8NHS4 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLHC1Q8NHS4 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLHC1Q8NHS4 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLHC1Q8NHS4 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
CLHC1Q8NHS4 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLHC1Q8NHS4 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLHC1Q8NHS4 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.02■□□□□ 0.47
CLHC1Q8NHS4 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 AL499627.1-201ENST00000569373 2188 ntBASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 HTR7P1-201ENST00000538670 1336 ntBASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 RCC2P6-201ENST00000526625 1557 ntBASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 NIFKP9-201ENST00000419265 221 ntBASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 POU5F1P3-201ENST00000428824 1078 ntBASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 AC004980.1-204ENST00000429707 299 ntBASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 AC128676.1-201ENST00000454392 318 ntBASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 AC133681.1-201ENST00000465482 601 ntBASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 RPS2P4-201ENST00000476944 856 ntBASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 C1QBPP2-201ENST00000528754 825 ntBASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 AL445675.2-201ENST00000620291 557 ntBASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLHC1Q8NHS4 AC005332.8-201ENST00000622750 2735 ntBASIC18■□□□□ 0.47
CLHC1Q8NHS4 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
CLHC1Q8NHS4 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18■□□□□ 0.47
CLHC1Q8NHS4 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLHC1Q8NHS4 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18■□□□□ 0.47
CLHC1Q8NHS4 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18■□□□□ 0.47
CLHC1Q8NHS4 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLHC1Q8NHS4 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLHC1Q8NHS4 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18■□□□□ 0.47
CLHC1Q8NHS4 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18■□□□□ 0.47
CLHC1Q8NHS4 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18■□□□□ 0.47
CLHC1Q8NHS4 AP002982.1-201ENST00000492365 877 ntBASIC18■□□□□ 0.47
CLHC1Q8NHS4 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18■□□□□ 0.47
CLHC1Q8NHS4 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18■□□□□ 0.47
CLHC1Q8NHS4 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
CLHC1Q8NHS4 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18■□□□□ 0.47
CLHC1Q8NHS4 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
CLHC1Q8NHS4 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18■□□□□ 0.47
CLHC1Q8NHS4 AC131212.4-201ENST00000623606 975 ntBASIC18■□□□□ 0.47
CLHC1Q8NHS4 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18■□□□□ 0.47
CLHC1Q8NHS4 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18■□□□□ 0.47
CLHC1Q8NHS4 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18■□□□□ 0.47
CLHC1Q8NHS4 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
CLHC1Q8NHS4 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18■□□□□ 0.47
CLHC1Q8NHS4 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLHC1Q8NHS4 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLHC1Q8NHS4 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18■□□□□ 0.47
CLHC1Q8NHS4 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18■□□□□ 0.47
CLHC1Q8NHS4 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
CLHC1Q8NHS4 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLHC1Q8NHS4 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLHC1Q8NHS4 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLHC1Q8NHS4 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CLHC1Q8NHS4 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18■□□□□ 0.47
CLHC1Q8NHS4 HEIH-201ENST00000623091 1652 ntBASIC17.99■□□□□ 0.47
CLHC1Q8NHS4 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CLHC1Q8NHS4 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.99■□□□□ 0.47
CLHC1Q8NHS4 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.99■□□□□ 0.47
CLHC1Q8NHS4 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CLHC1Q8NHS4 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLHC1Q8NHS4 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
CLHC1Q8NHS4 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLHC1Q8NHS4 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLHC1Q8NHS4 BICD1-207ENST00000551848 1962 ntBASIC17.99■□□□□ 0.47
CLHC1Q8NHS4 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLHC1Q8NHS4 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CLHC1Q8NHS4 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms