Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC60Q8IWA6 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 AC006333.2-201ENST00000607957 2099 ntBASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 UPK3BP1-201ENST00000428678 509 ntBASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 MIR3917-201ENST00000580971 93 ntBASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 AC116407.4-201ENST00000623319 1061 ntBASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 AC079602.3-201ENST00000623931 403 ntBASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 IER3-202ENST00000376377 1350 ntBASIC20.84■□□□□ 0.93
CCDC60Q8IWA6 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC60Q8IWA6 NFYC-AS1-201ENST00000606277 1687 ntBASIC20.83■□□□□ 0.93
CCDC60Q8IWA6 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC60Q8IWA6 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
CCDC60Q8IWA6 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC60Q8IWA6 AC034236.2-201ENST00000606662 1610 ntBASIC20.83■□□□□ 0.93
CCDC60Q8IWA6 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC60Q8IWA6 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC60Q8IWA6 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC60Q8IWA6 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC60Q8IWA6 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC60Q8IWA6 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC60Q8IWA6 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC60Q8IWA6 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC60Q8IWA6 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC60Q8IWA6 VENTXP5-201ENST00000523979 775 ntBASIC20.83■□□□□ 0.93
CCDC60Q8IWA6 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC60Q8IWA6 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC20.83■□□□□ 0.93
CCDC60Q8IWA6 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
CCDC60Q8IWA6 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC60Q8IWA6 KRT8P7-201ENST00000533003 1432 ntBASIC20.83■□□□□ 0.93
CCDC60Q8IWA6 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC60Q8IWA6 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.83■□□□□ 0.92
CCDC60Q8IWA6 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC60Q8IWA6 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC60Q8IWA6 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.83■□□□□ 0.92
CCDC60Q8IWA6 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
CCDC60Q8IWA6 AL357033.4-201ENST00000617703 1807 ntBASIC20.83■□□□□ 0.92
CCDC60Q8IWA6 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC60Q8IWA6 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC60Q8IWA6 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
CCDC60Q8IWA6 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
CCDC60Q8IWA6 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 AC104390.1-201ENST00000555663 520 ntBASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC60Q8IWA6 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC60Q8IWA6 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms