Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SOX3P41225 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SOX3P41225 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SOX3P41225 KRT8P11-201ENST00000409686 1436 ntBASIC17.64■□□□□ 0.41
SOX3P41225 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.64■□□□□ 0.41
SOX3P41225 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.63■□□□□ 0.41
SOX3P41225 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SOX3P41225 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SOX3P41225 AC018470.1-201ENST00000624790 3129 ntBASIC17.63■□□□□ 0.41
SOX3P41225 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SOX3P41225 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SOX3P41225 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SOX3P41225 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SOX3P41225 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SOX3P41225 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SOX3P41225 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SOX3P41225 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SOX3P41225 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC17.63■□□□□ 0.41
SOX3P41225 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.63■□□□□ 0.41
SOX3P41225 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SOX3P41225 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SOX3P41225 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SOX3P41225 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SOX3P41225 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.63■□□□□ 0.41
SOX3P41225 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.63■□□□□ 0.41
SOX3P41225 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SOX3P41225 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.63■□□□□ 0.41
SOX3P41225 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.63■□□□□ 0.41
SOX3P41225 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SOX3P41225 CKBP1-201ENST00000565489 1086 ntBASIC17.63■□□□□ 0.41
SOX3P41225 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SOX3P41225 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.63■□□□□ 0.41
SOX3P41225 KRT18P22-201ENST00000402024 1347 ntBASIC17.63■□□□□ 0.41
SOX3P41225 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SOX3P41225 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.63■□□□□ 0.41
SOX3P41225 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SOX3P41225 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SOX3P41225 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.63■□□□□ 0.41
SOX3P41225 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SOX3P41225 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SOX3P41225 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SOX3P41225 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.62■□□□□ 0.41
SOX3P41225 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.62■□□□□ 0.41
SOX3P41225 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
SOX3P41225 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.62■□□□□ 0.41
SOX3P41225 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SOX3P41225 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.62■□□□□ 0.41
SOX3P41225 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.62■□□□□ 0.41
SOX3P41225 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
SOX3P41225 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.62■□□□□ 0.41
SOX3P41225 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
SOX3P41225 TSPY14P-201ENST00000303979 915 ntBASIC17.62■□□□□ 0.41
SOX3P41225 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
SOX3P41225 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.62■□□□□ 0.41
SOX3P41225 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.62■□□□□ 0.41
SOX3P41225 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.62■□□□□ 0.41
SOX3P41225 KRT18P21-201ENST00000515767 1272 ntBASIC17.62■□□□□ 0.41
SOX3P41225 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.62■□□□□ 0.41
SOX3P41225 EGLN1P1-201ENST00000531623 762 ntBASIC17.62■□□□□ 0.41
SOX3P41225 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SOX3P41225 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.62■□□□□ 0.41
SOX3P41225 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.62■□□□□ 0.41
SOX3P41225 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.62■□□□□ 0.41
SOX3P41225 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.62■□□□□ 0.41
SOX3P41225 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
SOX3P41225 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
SOX3P41225 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
SOX3P41225 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SOX3P41225 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
SOX3P41225 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SOX3P41225 AC009113.1-201ENST00000570267 2443 ntBASIC17.62■□□□□ 0.41
SOX3P41225 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SOX3P41225 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
SOX3P41225 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.62■□□□□ 0.41
SOX3P41225 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SOX3P41225 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
SOX3P41225 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
SOX3P41225 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SOX3P41225 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SOX3P41225 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.62■□□□□ 0.41
SOX3P41225 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
SOX3P41225 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SOX3P41225 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
SOX3P41225 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.61■□□□□ 0.41
SOX3P41225 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SOX3P41225 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SOX3P41225 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
SOX3P41225 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
SOX3P41225 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
SOX3P41225 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.61■□□□□ 0.41
SOX3P41225 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SOX3P41225 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SOX3P41225 PRSS44-201ENST00000515154 1146 ntBASIC17.61■□□□□ 0.41
SOX3P41225 AC005363.2-201ENST00000618631 242 ntBASIC17.61■□□□□ 0.41
SOX3P41225 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
SOX3P41225 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.61■□□□□ 0.41
SOX3P41225 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.61■□□□□ 0.41
SOX3P41225 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SOX3P41225 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SOX3P41225 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms