Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
CIITAP33076 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC21.13■□□□□ 0.97
CIITAP33076 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC21.13■□□□□ 0.97
CIITAP33076 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CIITAP33076 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC21.13■□□□□ 0.97
CIITAP33076 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CIITAP33076 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CIITAP33076 AC022616.7-201ENST00000525383 220 ntBASIC21.13■□□□□ 0.97
CIITAP33076 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC21.13■□□□□ 0.97
CIITAP33076 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
CIITAP33076 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC21.13■□□□□ 0.97
CIITAP33076 AC010331.1-201ENST00000611423 582 ntBASIC21.13■□□□□ 0.97
CIITAP33076 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CIITAP33076 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CIITAP33076 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC21.13■□□□□ 0.97
CIITAP33076 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CIITAP33076 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CIITAP33076 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC21.13■□□□□ 0.97
CIITAP33076 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
CIITAP33076 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC21.13■□□□□ 0.97
CIITAP33076 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
CIITAP33076 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CIITAP33076 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC21.12■□□□□ 0.97
CIITAP33076 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CIITAP33076 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CIITAP33076 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CIITAP33076 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC21.12■□□□□ 0.97
CIITAP33076 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC21.12■□□□□ 0.97
CIITAP33076 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC21.12■□□□□ 0.97
CIITAP33076 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
CIITAP33076 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CIITAP33076 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CIITAP33076 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CIITAP33076 GRAMD4P1-201ENST00000435181 1110 ntBASIC21.12■□□□□ 0.97
CIITAP33076 HOMER2P1-201ENST00000455653 964 ntBASIC21.12■□□□□ 0.97
CIITAP33076 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CIITAP33076 AC104390.1-201ENST00000555663 520 ntBASIC21.12■□□□□ 0.97
CIITAP33076 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC21.12■□□□□ 0.97
CIITAP33076 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CIITAP33076 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.12■□□□□ 0.97
CIITAP33076 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CIITAP33076 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CIITAP33076 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CIITAP33076 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CIITAP33076 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
CIITAP33076 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CIITAP33076 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC21.11■□□□□ 0.97
CIITAP33076 GUK1-204ENST00000366721 689 ntTSL 3 BASIC21.11■□□□□ 0.97
CIITAP33076 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
CIITAP33076 KRT18P23-201ENST00000435622 1283 ntBASIC21.11■□□□□ 0.97
CIITAP33076 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC21.11■□□□□ 0.97
CIITAP33076 AC024243.1-201ENST00000609234 778 ntBASIC21.11■□□□□ 0.97
CIITAP33076 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC21.11■□□□□ 0.97
CIITAP33076 AL590326.2-201ENST00000625139 305 ntBASIC21.11■□□□□ 0.97
CIITAP33076 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CIITAP33076 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC21.11■□□□□ 0.97
CIITAP33076 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC21.11■□□□□ 0.97
CIITAP33076 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CIITAP33076 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC21.11■□□□□ 0.97
CIITAP33076 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CIITAP33076 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CIITAP33076 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CIITAP33076 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
CIITAP33076 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC21.1■□□□□ 0.97
CIITAP33076 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC21.1■□□□□ 0.97
CIITAP33076 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CIITAP33076 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CIITAP33076 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CIITAP33076 STARP1-201ENST00000397973 869 ntBASIC21.1■□□□□ 0.97
CIITAP33076 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC21.1■□□□□ 0.97
CIITAP33076 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CIITAP33076 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC21.1■□□□□ 0.97
CIITAP33076 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CIITAP33076 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
CIITAP33076 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC21.1■□□□□ 0.97
CIITAP33076 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CIITAP33076 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
CIITAP33076 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC21.1■□□□□ 0.97
CIITAP33076 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC21.1■□□□□ 0.97
CIITAP33076 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
CIITAP33076 COBL-210ENST00000632460 1941 ntTSL 5 BASIC21.1■□□□□ 0.97
CIITAP33076 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CIITAP33076 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CIITAP33076 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CIITAP33076 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CIITAP33076 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
CIITAP33076 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC21.09■□□□□ 0.97
CIITAP33076 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC21.09■□□□□ 0.97
CIITAP33076 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CIITAP33076 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CIITAP33076 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CIITAP33076 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC21.09■□□□□ 0.97
CIITAP33076 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC21.09■□□□□ 0.97
CIITAP33076 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC21.09■□□□□ 0.97
CIITAP33076 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC21.09■□□□□ 0.97
CIITAP33076 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC21.09■□□□□ 0.97
CIITAP33076 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC21.09■□□□□ 0.97
CIITAP33076 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC21.09■□□□□ 0.97
CIITAP33076 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
CIITAP33076 MYC-208ENST00000641036 567 ntBASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms