Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DMBP28068 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC14.31□□□□□ -0.12
HLA-DMBP28068 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DMBP28068 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DMBP28068 AL133373.2-201ENST00000623187 2828 ntBASIC14.31□□□□□ -0.12
HLA-DMBP28068 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DMBP28068 COBL-210ENST00000632460 1941 ntTSL 5 BASIC14.31□□□□□ -0.12
HLA-DMBP28068 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC14.31□□□□□ -0.12
HLA-DMBP28068 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DMBP28068 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
HLA-DMBP28068 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HLA-DMBP28068 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
HLA-DMBP28068 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HLA-DMBP28068 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HLA-DMBP28068 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC14.3□□□□□ -0.12
HLA-DMBP28068 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HLA-DMBP28068 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC14.3□□□□□ -0.12
HLA-DMBP28068 AC126763.1-201ENST00000552015 2118 ntBASIC14.3□□□□□ -0.12
HLA-DMBP28068 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HLA-DMBP28068 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC14.3□□□□□ -0.12
HLA-DMBP28068 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC14.3□□□□□ -0.12
HLA-DMBP28068 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC14.3□□□□□ -0.12
HLA-DMBP28068 PXK-206ENST00000463280 2825 ntTSL 2 BASIC14.3□□□□□ -0.12
HLA-DMBP28068 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HLA-DMBP28068 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC14.3□□□□□ -0.12
HLA-DMBP28068 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
HLA-DMBP28068 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
HLA-DMBP28068 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
HLA-DMBP28068 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HLA-DMBP28068 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
HLA-DMBP28068 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
HLA-DMBP28068 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.3□□□□□ -0.12
HLA-DMBP28068 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HLA-DMBP28068 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC14.3□□□□□ -0.12
HLA-DMBP28068 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
HLA-DMBP28068 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC14.3□□□□□ -0.12
HLA-DMBP28068 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.3□□□□□ -0.12
HLA-DMBP28068 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC14.3□□□□□ -0.12
HLA-DMBP28068 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.3□□□□□ -0.12
HLA-DMBP28068 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC14.3□□□□□ -0.12
HLA-DMBP28068 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC14.3□□□□□ -0.12
HLA-DMBP28068 RPS2P4-201ENST00000476944 856 ntBASIC14.3□□□□□ -0.12
HLA-DMBP28068 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC14.3□□□□□ -0.12
HLA-DMBP28068 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC14.3□□□□□ -0.12
HLA-DMBP28068 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC14.3□□□□□ -0.12
HLA-DMBP28068 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC14.3□□□□□ -0.12
HLA-DMBP28068 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
HLA-DMBP28068 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
HLA-DMBP28068 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HLA-DMBP28068 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HLA-DMBP28068 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HLA-DMBP28068 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
HLA-DMBP28068 LETM1P2-201ENST00000597330 2178 ntBASIC14.3□□□□□ -0.12
HLA-DMBP28068 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC14.3□□□□□ -0.12
HLA-DMBP28068 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HLA-DMBP28068 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HLA-DMBP28068 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HLA-DMBP28068 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HLA-DMBP28068 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HLA-DMBP28068 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC14.3□□□□□ -0.12
HLA-DMBP28068 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HLA-DMBP28068 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-DMBP28068 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-DMBP28068 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-DMBP28068 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-DMBP28068 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-DMBP28068 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
HLA-DMBP28068 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-DMBP28068 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-DMBP28068 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
HLA-DMBP28068 SNAI3-AS1-205ENST00000568633 2096 ntBASIC14.29□□□□□ -0.12
HLA-DMBP28068 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
HLA-DMBP28068 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-DMBP28068 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
HLA-DMBP28068 AC239809.2-201ENST00000415381 517 ntBASIC14.29□□□□□ -0.12
HLA-DMBP28068 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC14.29□□□□□ -0.12
HLA-DMBP28068 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC14.29□□□□□ -0.12
HLA-DMBP28068 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC14.29□□□□□ -0.12
HLA-DMBP28068 USP36-216ENST00000589424 970 ntTSL 5 BASIC14.29□□□□□ -0.12
HLA-DMBP28068 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC14.29□□□□□ -0.12
HLA-DMBP28068 SPIB-206ENST00000596074 847 ntTSL 2 BASIC14.29□□□□□ -0.12
HLA-DMBP28068 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC14.29□□□□□ -0.12
HLA-DMBP28068 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-DMBP28068 MME-217ENST00000616757 1315 ntTSL 5 BASIC14.29□□□□□ -0.12
HLA-DMBP28068 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-DMBP28068 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-DMBP28068 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC14.29□□□□□ -0.12
HLA-DMBP28068 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-DMBP28068 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-DMBP28068 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-DMBP28068 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-DMBP28068 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
HLA-DMBP28068 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-DMBP28068 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-DMBP28068 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HLA-DMBP28068 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC14.28□□□□□ -0.12
HLA-DMBP28068 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-DMBP28068 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
HLA-DMBP28068 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-DMBP28068 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms