Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
MSH3P20585 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSH3P20585 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSH3P20585 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
MSH3P20585 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSH3P20585 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSH3P20585 AL138781.2-201ENST00000617896 1843 ntBASIC18.66■□□□□ 0.58
MSH3P20585 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSH3P20585 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
MSH3P20585 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.66■□□□□ 0.58
MSH3P20585 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC18.66■□□□□ 0.58
MSH3P20585 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
MSH3P20585 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.66■□□□□ 0.58
MSH3P20585 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC18.66■□□□□ 0.58
MSH3P20585 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.66■□□□□ 0.58
MSH3P20585 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSH3P20585 KRT18P22-201ENST00000402024 1347 ntBASIC18.66■□□□□ 0.58
MSH3P20585 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.66■□□□□ 0.58
MSH3P20585 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.66■□□□□ 0.58
MSH3P20585 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSH3P20585 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
MSH3P20585 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSH3P20585 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
MSH3P20585 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSH3P20585 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.65■□□□□ 0.58
MSH3P20585 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.65■□□□□ 0.58
MSH3P20585 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
MSH3P20585 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
MSH3P20585 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
MSH3P20585 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSH3P20585 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSH3P20585 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSH3P20585 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.65■□□□□ 0.58
MSH3P20585 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
MSH3P20585 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
MSH3P20585 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSH3P20585 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
MSH3P20585 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
MSH3P20585 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
MSH3P20585 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MSH3P20585 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MSH3P20585 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSH3P20585 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSH3P20585 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.65■□□□□ 0.58
MSH3P20585 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
MSH3P20585 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSH3P20585 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.65■□□□□ 0.58
MSH3P20585 AC092338.2-201ENST00000568827 1415 ntBASIC18.65■□□□□ 0.58
MSH3P20585 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSH3P20585 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
MSH3P20585 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MSH3P20585 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.65■□□□□ 0.58
MSH3P20585 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.65■□□□□ 0.58
MSH3P20585 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.64■□□□□ 0.58
MSH3P20585 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.64■□□□□ 0.58
MSH3P20585 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
MSH3P20585 AL512353.2-201ENST00000448759 1962 ntBASIC18.64■□□□□ 0.58
MSH3P20585 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
MSH3P20585 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
MSH3P20585 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
MSH3P20585 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.64■□□□□ 0.58
MSH3P20585 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MSH3P20585 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
MSH3P20585 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.64■□□□□ 0.57
MSH3P20585 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.64■□□□□ 0.57
MSH3P20585 AC211429.1-201ENST00000415277 523 ntBASIC18.64■□□□□ 0.57
MSH3P20585 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC18.64■□□□□ 0.57
MSH3P20585 AC007663.1-201ENST00000438948 1240 ntBASIC18.64■□□□□ 0.57
MSH3P20585 ECEL1P2-202ENST00000465689 757 ntBASIC18.64■□□□□ 0.57
MSH3P20585 AP003041.3-201ENST00000527151 707 ntBASIC18.64■□□□□ 0.57
MSH3P20585 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.64■□□□□ 0.57
MSH3P20585 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
MSH3P20585 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.64■□□□□ 0.57
MSH3P20585 AC145285.6-201ENST00000604632 637 ntBASIC18.64■□□□□ 0.57
MSH3P20585 AC008622.2-201ENST00000617006 1229 ntBASIC18.64■□□□□ 0.57
MSH3P20585 AC010653.2-201ENST00000623505 997 ntBASIC18.64■□□□□ 0.57
MSH3P20585 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MSH3P20585 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MSH3P20585 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
MSH3P20585 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.64■□□□□ 0.57
MSH3P20585 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.64■□□□□ 0.57
MSH3P20585 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MSH3P20585 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.63■□□□□ 0.57
MSH3P20585 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSH3P20585 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSH3P20585 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MSH3P20585 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.63■□□□□ 0.57
MSH3P20585 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
MSH3P20585 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSH3P20585 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18.63■□□□□ 0.57
MSH3P20585 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.63■□□□□ 0.57
MSH3P20585 LINC01023-201ENST00000606054 436 ntBASIC18.63■□□□□ 0.57
MSH3P20585 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
MSH3P20585 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.63■□□□□ 0.57
MSH3P20585 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSH3P20585 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
MSH3P20585 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
MSH3P20585 BCL2-203ENST00000589955 5011 ntBASIC18.63■□□□□ 0.57
MSH3P20585 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.63■□□□□ 0.57
MSH3P20585 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms