Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC21.67■■□□□ 1.06
ERCC3P19447 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
ERCC3P19447 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
ERCC3P19447 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
ERCC3P19447 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
ERCC3P19447 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC21.67■■□□□ 1.06
ERCC3P19447 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC21.67■■□□□ 1.06
ERCC3P19447 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC21.67■■□□□ 1.06
ERCC3P19447 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC21.67■■□□□ 1.06
ERCC3P19447 AC092119.3-201ENST00000612618 583 ntBASIC21.67■■□□□ 1.06
ERCC3P19447 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC21.67■■□□□ 1.06
ERCC3P19447 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
ERCC3P19447 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC21.67■■□□□ 1.06
ERCC3P19447 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC21.67■■□□□ 1.06
ERCC3P19447 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
ERCC3P19447 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
ERCC3P19447 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ERCC3P19447 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
ERCC3P19447 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ERCC3P19447 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC21.66■■□□□ 1.06
ERCC3P19447 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ERCC3P19447 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC21.66■■□□□ 1.06
ERCC3P19447 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ERCC3P19447 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ERCC3P19447 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC21.66■■□□□ 1.06
ERCC3P19447 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC21.66■■□□□ 1.06
ERCC3P19447 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC21.66■■□□□ 1.06
ERCC3P19447 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC21.66■■□□□ 1.06
ERCC3P19447 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC21.66■■□□□ 1.06
ERCC3P19447 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
ERCC3P19447 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC21.66■■□□□ 1.06
ERCC3P19447 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC21.66■■□□□ 1.06
ERCC3P19447 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC21.66■■□□□ 1.06
ERCC3P19447 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC21.66■■□□□ 1.06
ERCC3P19447 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ERCC3P19447 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
ERCC3P19447 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC21.66■■□□□ 1.06
ERCC3P19447 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
ERCC3P19447 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
ERCC3P19447 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
ERCC3P19447 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
ERCC3P19447 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ERCC3P19447 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.65■■□□□ 1.06
ERCC3P19447 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC21.65■■□□□ 1.06
ERCC3P19447 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ERCC3P19447 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
ERCC3P19447 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
ERCC3P19447 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ERCC3P19447 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC21.65■■□□□ 1.06
ERCC3P19447 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ERCC3P19447 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
ERCC3P19447 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ERCC3P19447 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
ERCC3P19447 MCCD1P1-208ENST00000445732 328 ntBASIC21.65■■□□□ 1.06
ERCC3P19447 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
ERCC3P19447 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC21.65■■□□□ 1.06
ERCC3P19447 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC21.65■■□□□ 1.06
ERCC3P19447 TREX1-205ENST00000625293 1783 ntBASIC21.65■■□□□ 1.06
ERCC3P19447 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ERCC3P19447 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC21.65■■□□□ 1.06
ERCC3P19447 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
ERCC3P19447 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
ERCC3P19447 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ERCC3P19447 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ERCC3P19447 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC21.65■■□□□ 1.06
ERCC3P19447 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
ERCC3P19447 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC21.64■■□□□ 1.06
ERCC3P19447 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.06
ERCC3P19447 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
ERCC3P19447 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
ERCC3P19447 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
ERCC3P19447 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC21.64■■□□□ 1.06
ERCC3P19447 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
ERCC3P19447 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC21.64■■□□□ 1.06
ERCC3P19447 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
ERCC3P19447 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
ERCC3P19447 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
ERCC3P19447 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
ERCC3P19447 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
ERCC3P19447 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC21.64■■□□□ 1.05
ERCC3P19447 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC21.64■■□□□ 1.05
ERCC3P19447 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC21.64■■□□□ 1.05
ERCC3P19447 MIR3180-5-201ENST00000583743 153 ntBASIC21.64■■□□□ 1.05
ERCC3P19447 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
ERCC3P19447 VPS72-207ENST00000640458 689 ntTSL 5 BASIC21.64■■□□□ 1.05
ERCC3P19447 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
ERCC3P19447 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC21.64■■□□□ 1.05
ERCC3P19447 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
ERCC3P19447 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
ERCC3P19447 AC120498.9-201ENST00000339021 3867 ntBASIC21.64■■□□□ 1.05
ERCC3P19447 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
ERCC3P19447 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
ERCC3P19447 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ERCC3P19447 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ERCC3P19447 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ERCC3P19447 POLI-202ENST00000406285 2030 ntTSL 2 BASIC21.63■■□□□ 1.05
ERCC3P19447 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ERCC3P19447 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ERCC3P19447 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC21.63■■□□□ 1.05
ERCC3P19447 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms