Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
XRCC1P18887 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
XRCC1P18887 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
XRCC1P18887 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
XRCC1P18887 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
XRCC1P18887 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC18.7■□□□□ 0.58
XRCC1P18887 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
XRCC1P18887 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
XRCC1P18887 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC18.7■□□□□ 0.58
XRCC1P18887 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.7■□□□□ 0.58
XRCC1P18887 AC128688.1-201ENST00000487626 519 ntBASIC18.7■□□□□ 0.58
XRCC1P18887 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.7■□□□□ 0.58
XRCC1P18887 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
XRCC1P18887 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.7■□□□□ 0.58
XRCC1P18887 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
XRCC1P18887 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.7■□□□□ 0.58
XRCC1P18887 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
XRCC1P18887 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.7■□□□□ 0.58
XRCC1P18887 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
XRCC1P18887 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
XRCC1P18887 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
XRCC1P18887 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
XRCC1P18887 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
XRCC1P18887 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.7■□□□□ 0.58
XRCC1P18887 AC135050.7-201ENST00000624508 2218 ntBASIC18.7■□□□□ 0.58
XRCC1P18887 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
XRCC1P18887 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
XRCC1P18887 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
XRCC1P18887 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
XRCC1P18887 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
XRCC1P18887 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
XRCC1P18887 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
XRCC1P18887 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
XRCC1P18887 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
XRCC1P18887 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.69■□□□□ 0.58
XRCC1P18887 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.69■□□□□ 0.58
XRCC1P18887 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.69■□□□□ 0.58
XRCC1P18887 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.69■□□□□ 0.58
XRCC1P18887 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
XRCC1P18887 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
XRCC1P18887 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
XRCC1P18887 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
XRCC1P18887 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
XRCC1P18887 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
XRCC1P18887 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
XRCC1P18887 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
XRCC1P18887 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
XRCC1P18887 RCN1P1-201ENST00000400413 996 ntBASIC18.69■□□□□ 0.58
XRCC1P18887 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.69■□□□□ 0.58
XRCC1P18887 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.69■□□□□ 0.58
XRCC1P18887 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.69■□□□□ 0.58
XRCC1P18887 KRT18P21-201ENST00000515767 1272 ntBASIC18.69■□□□□ 0.58
XRCC1P18887 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.69■□□□□ 0.58
XRCC1P18887 AL133373.2-201ENST00000623187 2828 ntBASIC18.69■□□□□ 0.58
XRCC1P18887 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
XRCC1P18887 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
XRCC1P18887 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
XRCC1P18887 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
XRCC1P18887 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.69■□□□□ 0.58
XRCC1P18887 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
XRCC1P18887 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
XRCC1P18887 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.68■□□□□ 0.58
XRCC1P18887 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.68■□□□□ 0.58
XRCC1P18887 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.68■□□□□ 0.58
XRCC1P18887 SLC25A1P2-201ENST00000430693 912 ntBASIC18.68■□□□□ 0.58
XRCC1P18887 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.68■□□□□ 0.58
XRCC1P18887 CKBP1-201ENST00000565489 1086 ntBASIC18.68■□□□□ 0.58
XRCC1P18887 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.68■□□□□ 0.58
XRCC1P18887 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
XRCC1P18887 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC18.68■□□□□ 0.58
XRCC1P18887 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.68■□□□□ 0.58
XRCC1P18887 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
XRCC1P18887 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.68■□□□□ 0.58
XRCC1P18887 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.68■□□□□ 0.58
XRCC1P18887 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
XRCC1P18887 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
XRCC1P18887 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
XRCC1P18887 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.68■□□□□ 0.58
XRCC1P18887 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
XRCC1P18887 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
XRCC1P18887 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
XRCC1P18887 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.68■□□□□ 0.58
XRCC1P18887 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
XRCC1P18887 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
XRCC1P18887 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
XRCC1P18887 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
XRCC1P18887 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.67■□□□□ 0.58
XRCC1P18887 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.67■□□□□ 0.58
XRCC1P18887 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
XRCC1P18887 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.67■□□□□ 0.58
XRCC1P18887 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.67■□□□□ 0.58
XRCC1P18887 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.67■□□□□ 0.58
XRCC1P18887 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
XRCC1P18887 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
XRCC1P18887 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.67■□□□□ 0.58
XRCC1P18887 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
XRCC1P18887 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
XRCC1P18887 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC18.67■□□□□ 0.58
XRCC1P18887 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
XRCC1P18887 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms