Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.44■□□□□ 0.7
HMGA1P17096 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HMGA1P17096 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
HMGA1P17096 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HMGA1P17096 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HMGA1P17096 PVRIG2P-201ENST00000435460 978 ntBASIC19.44■□□□□ 0.7
HMGA1P17096 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.44■□□□□ 0.7
HMGA1P17096 KRT126P-201ENST00000549467 1181 ntBASIC19.44■□□□□ 0.7
HMGA1P17096 RNF126P1-202ENST00000569893 925 ntBASIC19.44■□□□□ 0.7
HMGA1P17096 NAA38-203ENST00000575071 553 ntTSL 2 BASIC19.44■□□□□ 0.7
HMGA1P17096 CLEC4GP1-201ENST00000596555 870 ntBASIC19.44■□□□□ 0.7
HMGA1P17096 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HMGA1P17096 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HMGA1P17096 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC19.44■□□□□ 0.7
HMGA1P17096 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HMGA1P17096 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HMGA1P17096 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HMGA1P17096 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HMGA1P17096 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HMGA1P17096 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HMGA1P17096 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
HMGA1P17096 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HMGA1P17096 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGA1P17096 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC19.43■□□□□ 0.7
HMGA1P17096 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGA1P17096 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGA1P17096 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.43■□□□□ 0.7
HMGA1P17096 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGA1P17096 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGA1P17096 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGA1P17096 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
HMGA1P17096 AP002383.4-201ENST00000442518 975 ntBASIC19.43■□□□□ 0.7
HMGA1P17096 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC19.43■□□□□ 0.7
HMGA1P17096 TSSC2-201ENST00000450217 709 ntBASIC19.43■□□□□ 0.7
HMGA1P17096 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
HMGA1P17096 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.43■□□□□ 0.7
HMGA1P17096 AL121672.3-201ENST00000608644 468 ntBASIC19.43■□□□□ 0.7
HMGA1P17096 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HMGA1P17096 AC092119.3-201ENST00000612618 583 ntBASIC19.43■□□□□ 0.7
HMGA1P17096 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
HMGA1P17096 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
HMGA1P17096 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
HMGA1P17096 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HMGA1P17096 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.43■□□□□ 0.7
HMGA1P17096 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGA1P17096 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.43■□□□□ 0.7
HMGA1P17096 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.42■□□□□ 0.7
HMGA1P17096 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.42■□□□□ 0.7
HMGA1P17096 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGA1P17096 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.42■□□□□ 0.7
HMGA1P17096 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGA1P17096 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
HMGA1P17096 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HMGA1P17096 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGA1P17096 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGA1P17096 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
HMGA1P17096 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGA1P17096 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
HMGA1P17096 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGA1P17096 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGA1P17096 IPPK-202ENST00000375522 882 ntTSL 3 BASIC19.42■□□□□ 0.7
HMGA1P17096 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HMGA1P17096 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
HMGA1P17096 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC19.42■□□□□ 0.7
HMGA1P17096 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC19.42■□□□□ 0.7
HMGA1P17096 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC19.42■□□□□ 0.7
HMGA1P17096 BX276092.5-203ENST00000456199 560 ntBASIC19.42■□□□□ 0.7
HMGA1P17096 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HMGA1P17096 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC19.42■□□□□ 0.7
HMGA1P17096 KRT8P26-201ENST00000534154 1276 ntBASIC19.42■□□□□ 0.7
HMGA1P17096 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC19.42■□□□□ 0.7
HMGA1P17096 MIR3180-1-201ENST00000580374 94 ntBASIC19.42■□□□□ 0.7
HMGA1P17096 MIR3180-3-201ENST00000584616 94 ntBASIC19.42■□□□□ 0.7
HMGA1P17096 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGA1P17096 LITAF-220ENST00000620789 692 ntTSL 5 BASIC19.42■□□□□ 0.7
HMGA1P17096 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.42■□□□□ 0.7
HMGA1P17096 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HMGA1P17096 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HMGA1P17096 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGA1P17096 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
HMGA1P17096 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGA1P17096 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGA1P17096 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HMGA1P17096 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.42■□□□□ 0.7
HMGA1P17096 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HMGA1P17096 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGA1P17096 KRT8P50-201ENST00000562022 1438 ntBASIC19.42■□□□□ 0.7
HMGA1P17096 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.42■□□□□ 0.7
HMGA1P17096 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGA1P17096 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HMGA1P17096 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
HMGA1P17096 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.41■□□□□ 0.7
HMGA1P17096 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGA1P17096 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGA1P17096 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HMGA1P17096 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGA1P17096 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
HMGA1P17096 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HMGA1P17096 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGA1P17096 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms