Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
APOEP02649 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
APOEP02649 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
APOEP02649 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
APOEP02649 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.63■□□□□ 0.73
APOEP02649 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
APOEP02649 AL161938.1-201ENST00000569833 2180 ntBASIC19.63■□□□□ 0.73
APOEP02649 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
APOEP02649 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
APOEP02649 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
APOEP02649 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
APOEP02649 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
APOEP02649 KATNBL1P6-202ENST00000562413 1466 ntBASIC19.63■□□□□ 0.73
APOEP02649 KRT8P3-201ENST00000519669 1449 ntBASIC19.63■□□□□ 0.73
APOEP02649 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
APOEP02649 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
APOEP02649 HMGA1P5-201ENST00000412453 271 ntBASIC19.63■□□□□ 0.73
APOEP02649 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
APOEP02649 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.63■□□□□ 0.73
APOEP02649 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.63■□□□□ 0.73
APOEP02649 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC19.63■□□□□ 0.73
APOEP02649 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.63■□□□□ 0.73
APOEP02649 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC19.63■□□□□ 0.73
APOEP02649 FAM87A-204ENST00000613235 858 ntBASIC19.63■□□□□ 0.73
APOEP02649 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
APOEP02649 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
APOEP02649 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
APOEP02649 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.63■□□□□ 0.73
APOEP02649 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
APOEP02649 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.63■□□□□ 0.73
APOEP02649 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
APOEP02649 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.63■□□□□ 0.73
APOEP02649 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
APOEP02649 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
APOEP02649 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
APOEP02649 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
APOEP02649 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
APOEP02649 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC19.62■□□□□ 0.73
APOEP02649 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
APOEP02649 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
APOEP02649 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.62■□□□□ 0.73
APOEP02649 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
APOEP02649 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.62■□□□□ 0.73
APOEP02649 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.62■□□□□ 0.73
APOEP02649 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
APOEP02649 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC19.62■□□□□ 0.73
APOEP02649 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.62■□□□□ 0.73
APOEP02649 AP003041.3-201ENST00000527151 707 ntBASIC19.62■□□□□ 0.73
APOEP02649 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC19.62■□□□□ 0.73
APOEP02649 PPOX-219ENST00000544598 813 ntTSL 2 BASIC19.62■□□□□ 0.73
APOEP02649 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC19.62■□□□□ 0.73
APOEP02649 GPX4-207ENST00000589115 812 ntTSL 2 BASIC19.62■□□□□ 0.73
APOEP02649 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
APOEP02649 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
APOEP02649 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
APOEP02649 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
APOEP02649 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.62■□□□□ 0.73
APOEP02649 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
APOEP02649 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
APOEP02649 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
APOEP02649 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
APOEP02649 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
APOEP02649 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
APOEP02649 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.61■□□□□ 0.73
APOEP02649 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
APOEP02649 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
APOEP02649 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.61■□□□□ 0.73
APOEP02649 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
APOEP02649 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
APOEP02649 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
APOEP02649 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
APOEP02649 AC113347.1-201ENST00000413321 391 ntBASIC19.61■□□□□ 0.73
APOEP02649 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
APOEP02649 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
APOEP02649 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
APOEP02649 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.61■□□□□ 0.73
APOEP02649 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.61■□□□□ 0.73
APOEP02649 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
APOEP02649 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
APOEP02649 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.61■□□□□ 0.73
APOEP02649 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
APOEP02649 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
APOEP02649 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.61■□□□□ 0.73
APOEP02649 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.61■□□□□ 0.73
APOEP02649 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
APOEP02649 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
APOEP02649 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
APOEP02649 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
APOEP02649 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
APOEP02649 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
APOEP02649 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC19.6■□□□□ 0.73
APOEP02649 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
APOEP02649 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
APOEP02649 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
APOEP02649 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
APOEP02649 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
APOEP02649 LIN28AP1-201ENST00000429574 405 ntBASIC19.6■□□□□ 0.73
APOEP02649 AL137013.1-201ENST00000432946 1228 ntBASIC19.6■□□□□ 0.73
APOEP02649 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.6■□□□□ 0.73
APOEP02649 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms