Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.49■□□□□ 0.55
TRIM13O60858 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM13O60858 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM13O60858 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM13O60858 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.49■□□□□ 0.55
TRIM13O60858 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM13O60858 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.48■□□□□ 0.55
TRIM13O60858 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM13O60858 AL499627.1-201ENST00000569373 2188 ntBASIC18.48■□□□□ 0.55
TRIM13O60858 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
TRIM13O60858 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM13O60858 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM13O60858 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM13O60858 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.48■□□□□ 0.55
TRIM13O60858 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.48■□□□□ 0.55
TRIM13O60858 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
TRIM13O60858 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.48■□□□□ 0.55
TRIM13O60858 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
TRIM13O60858 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.48■□□□□ 0.55
TRIM13O60858 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.48■□□□□ 0.55
TRIM13O60858 GAMT-205ENST00000640762 751 ntTSL 5 BASIC18.48■□□□□ 0.55
TRIM13O60858 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM13O60858 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM13O60858 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM13O60858 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM13O60858 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.48■□□□□ 0.55
TRIM13O60858 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM13O60858 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM13O60858 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.48■□□□□ 0.55
TRIM13O60858 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM13O60858 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
TRIM13O60858 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM13O60858 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM13O60858 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
TRIM13O60858 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM13O60858 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM13O60858 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM13O60858 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM13O60858 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.47■□□□□ 0.55
TRIM13O60858 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
TRIM13O60858 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM13O60858 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM13O60858 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM13O60858 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM13O60858 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.47■□□□□ 0.55
TRIM13O60858 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
TRIM13O60858 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.47■□□□□ 0.55
TRIM13O60858 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.47■□□□□ 0.55
TRIM13O60858 AC069152.1-201ENST00000438030 544 ntBASIC18.47■□□□□ 0.55
TRIM13O60858 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM13O60858 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.47■□□□□ 0.55
TRIM13O60858 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.47■□□□□ 0.55
TRIM13O60858 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM13O60858 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM13O60858 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.47■□□□□ 0.55
TRIM13O60858 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM13O60858 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.47■□□□□ 0.55
TRIM13O60858 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM13O60858 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM13O60858 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM13O60858 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.46■□□□□ 0.55
TRIM13O60858 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
TRIM13O60858 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM13O60858 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM13O60858 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM13O60858 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM13O60858 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
TRIM13O60858 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
TRIM13O60858 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.46■□□□□ 0.55
TRIM13O60858 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.46■□□□□ 0.55
TRIM13O60858 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM13O60858 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.46■□□□□ 0.55
TRIM13O60858 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.46■□□□□ 0.55
TRIM13O60858 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.46■□□□□ 0.55
TRIM13O60858 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.46■□□□□ 0.55
TRIM13O60858 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM13O60858 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM13O60858 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.46■□□□□ 0.55
TRIM13O60858 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM13O60858 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM13O60858 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.46■□□□□ 0.55
TRIM13O60858 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
TRIM13O60858 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.46■□□□□ 0.55
TRIM13O60858 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
TRIM13O60858 AC067852.2-201ENST00000590513 2313 ntBASIC18.45■□□□□ 0.54
TRIM13O60858 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.45■□□□□ 0.54
TRIM13O60858 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM13O60858 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM13O60858 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
TRIM13O60858 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM13O60858 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM13O60858 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM13O60858 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM13O60858 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM13O60858 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM13O60858 POU5F1P3-201ENST00000428824 1078 ntBASIC18.45■□□□□ 0.54
TRIM13O60858 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC18.45■□□□□ 0.54
TRIM13O60858 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.45■□□□□ 0.54
TRIM13O60858 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM13O60858 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms